Gene detail

Gene detail information of Glyur002829s00039096

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15910.1	2.00E-161	XH/XS domain-containing protein
NR	XP_003530299.1	0	PREDICTED: structural maintenance of chromosomes protein 2-like isoform X1 [Glycine max]
Swissprot	tr\|Q9S9P3\|FDM1_ARATH	0	Factor of DNA methylation 1 {ECO:0000303\|PubMed:22302148}
trEMBL	tr\|I1KGU5\|I1KGU5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G02740.2}

Sequence

Transcript Sequence

>Glyur002829s00039096.1
TTTCATTTTACCTTTTCACGTTTCACTTTTTCATCGAACTGTGAGGTGAGAGCAGTGACCATTTCTGATTTCTCTCTCTGTGTGAAGCAATCTCATCAATAGCTTCAATGGACTATAGCTCTGAAGAAGAGTCAGATATCAGTGAATCTGAGATTGAGGACTACTTTGAGAAACCATATGAGCAGTTAAGGGCTGGTAAATACAAGGTTAAAAATCAGAATGGCACTCTGAGGTGCCCTTACTGTTCTGGCAAGAAGAAACAGGATTACAAATATAAGGACTTATTGCAGCATGCATCAGGAGTAGGTAAGGGTTCAGCAAACAGAAGCGCCAAACAAAAGGCCAACCACCTTGCTCTGGCGAAGTATTTGGAGACTGACCTTGCTAGTGAAGCAGACCAAATACCTCACCCAGCTTTACCCCAAGCTGTCAATCCACCAGTACAGCAAGATGATTTTTATGTTTGGCCCTGGACNGGCATAATTGTTAACATAAAGAGCAATTTACATGATTCTGGATACTGGTTGAAGGAATTTGCCAAATACAGACCATTAGATGTCCATATATTCTTGGTAGATGGTGACCTGATTGCTCAAGCTGTAGTAGACTTCAACAATGACTGGAACGGTTTCATGAATGCAAGTGAATTTGANAAATCATTTGAAACTGCTCATCATGGTAAAAAGGATTGGAATTCAAGGAATTCACAGGCCAGTTCACACATTTATGGATGGGTTGCACGGGAAGATGATTATAACTGTGGAGGGCCAATAGGGGAATACCTTCGCAACAAAGGANGGTTGAGGACAGTTTCAGATATTGTTCAAGAAGCATCTGAAAGCAGAAGTAGTATTGTGGCAAACCTAGCTAATGAAATTGATATTACAAATGAAAACCTCAACAAAATGGAATACAAGTATAATGAGAAGACTATGTCCTTGCGTAGGATGCTGGAGGAGAAAGACAAGCTACACAGTGCTTTTGTTGAAGAGTCAAAGAAATTGCAGCGTAAATCCTGTTATGAGGTACGGAGGATCTTGGAAGAACAAGAAAAGCTGAGTAGTGAATTGGATGCAAAAATGAGGAAGCTTGATTCCTGGAAAAGAGATCTGGACAAACGCGAGGTACTTACCACTGAAGAGAGGCAGAAACTTGATGAGGACAANAAGAAGAAAGATTTGAGGAATGAATCACTCTTGTTGGCTTCAAAGGAGCAGAAGATAGCTGATGAGAATGTCTATAGGCTTGTTGAGGAGCAGCAGAGAGAGAAAGAGGTGGCATTGAGCAAGATACTCCAGTTAACAAAACAACTTGATGCTAAACAGAAGTTGGAAATAGAAATTGAAGAGTTAAAAGGGAAATTGCAAGTTATGAAGCATCTTGAAGATGCAGATGATGAAGCTATTCAGAATAGTATGAAAAAAATGAATGATGAACTACAAGAAAAGATGGATAATTTGGATGATATGGAGGCCATGAATCAAACCCTCATTGTCAAGGAGCGCCAGAGCAATGATGAACTACAACAAGCTCGTAAAGTATTAATAAACGGGTTAAAGGAAATACTGAGTGGCAGTACTAAAACTAATATTGGGCTCAAGAGAATGGGAGAGCTTGATGAGAAGGTTTTTGTGAATATCTGCAAGAAAAAATATCCTCTTGAAGAAGCCGGGACAAAGGGTGTTGAGCTTTGCTCTTTATGGCAAGAGAACTTGAAGAATTCAGCCTGGCATCCCTTCAAAGTTATAAAAGTTGATGATAAAGTAGAGGCAACTCCTGATCTGGAAATTATAGATGAGAAAGATGATAAATTACAAAAGCTCAAGCAAGAATGGGGAGACGAGATACATTCAACTGTTGTTACTGCATTGAAAGAATTAAATGAATACAATCCAAGTGGTCGATATACTGTTCCTGAGCTATGGAACTTCAAGGAAAATAGGAAGGCAACCTTGAAAGAAGTTATCAGTTATATTGTGCAACAAATCAAGCAACCAGCTAAGCGCAAGAGATAGGCAAAAGGTACATATTTCAGTCCTGTTATATATGGCTTTCGTGGGCTTGTATGAATGTTGTTGCATCTTGAGGCTTTGCAGCTGATAAAATATGATATCTCACTGGAAGACGGAGGGTAGGATCTTTTTCATGGGCTCTTATGAGACGTCATAAACAAGCTACTGGAGATATAAGCGTTGAATATGAAACATTTCTATAGTTCTCATCANTGGTGGATTTGAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02829	5631	10944	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0031047 gene silencing by RNA

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002829s00039096.1	PF03470.9	zf-XS	43	85	3.00E-22
Glyur002829s00039096.1	PF03468.9	XS	114	222	1.80E-31
Glyur002829s00039096.1	PF03469.9	XH	498	633	6.20E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.928
SRR1783600	control	45.014
SRR1783602	moderate drought stress	44.351
SRR1811619	moderate drought stress	44.212

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	72.736
DRR006520	Root Summer glycyrrhizin high producing strain	71.894
DRR006521	Root Winter glycyrrhizin high producing strain	34.178
DRR006522	Root Winter glycyrrhizin high producing strain	33.403
DRR006523	Root Summer glycyrrhizin low producing strain	42.830
DRR006524	Root Summer glycyrrhizin low producing strain	42.593
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.447
DRR006526	Leaf Summer glycyrrhizin high producing strain	38.213

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	66.172
SRR2868004	Drought Stress (root)	48.936
SRR2967015	Control (root)	48.361

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.707
SRR9715740	Leaf	27.613
SRR9715741	Leaf	28.216
SRR9715739	Root	2.427
SRR9715742	Root	11.348
SRR9715743	Root	11.106

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	111.848
SRR8749028	MeJA induced 9h	103.464
SRR8749029	MeJA induced 9h	82.243
SRR8749030	Uninduced	44.679
SRR8749031	Uninduced	47.461
SRR8749032	Uninduced	28.933

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	65.575
SRR8400027	Control - Root	65.541