Gene detail information of Glyur002816s00039693 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06483.1 | 3.00E-178 | pyruvate dehydrogenase kinase |
| NR | XP_003546545.1 | 0 | PREDICTED: [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial [Glycine max] |
| Swissprot | tr|Q9SBJ1|PDK_ARATH | 0 | [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial |
| trEMBL | tr|Q6PP98|Q6PP98_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G21410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02816 | 25294 | 29353 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002816s00039693.1 | PF10436.4 | BCDHK_Adom3 | 28 | 190 | 1.20E-57 |
| Glyur002816s00039693.1 | PF02518.21 | HATPase_c | 232 | 359 | 1.60E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.434 |
| SRR1783600 | control | 7.523 |
| SRR1783602 | moderate drought stress | 12.231 |
| SRR1811619 | moderate drought stress | 12.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.298 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.208 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.562 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.329 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.740 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.692 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.395 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.543 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.526 |
| SRR2868004 | Drought Stress (root) | 43.414 |
| SRR2967015 | Control (root) | 56.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 49.007 |
| SRR9715740 | Leaf | 54.265 |
| SRR9715741 | Leaf | 62.527 |
| SRR9715739 | Root | 15.169 |
| SRR9715742 | Root | 18.104 |
| SRR9715743 | Root | 18.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.096 |
| SRR8749028 | MeJA induced 9h | 12.943 |
| SRR8749029 | MeJA induced 9h | 13.765 |
| SRR8749030 | Uninduced | 6.755 |
| SRR8749031 | Uninduced | 9.841 |
| SRR8749032 | Uninduced | 12.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.893 |
| SRR8400027 | Control - Root | 19.227 |