Gene detail information of Glyur002810s00046721 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19930.1 | 3.00E-06 | RNA-dependent RNA polymerase family protein |
| NR | XP_007152979.1 | 1.08E-10 | hypothetical protein PHAVU_004G1764001g, partial [Phaseolus vulgaris] |
| Swissprot | tr|O82188|RDR5_ARATH | 4.00E-07 | Probable RNA-dependent RNA polymerase 5 |
| trEMBL | tr|V7C6H2|V7C6H2_PHAVU | 4.00E-11 | Uncharacterized protein {ECO:0000313|EMBL:ESW24973.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02810 | 30807 | 32031 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.301 |
| SRR1783600 | control | 10.471 |
| SRR1783602 | moderate drought stress | 8.227 |
| SRR1811619 | moderate drought stress | 7.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.726 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.613 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.133 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.753 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.567 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.593 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.590 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.599 |
| SRR2868004 | Drought Stress (root) | 2.678 |
| SRR2967015 | Control (root) | 4.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.143 |
| SRR9715740 | Leaf | 11.729 |
| SRR9715741 | Leaf | 10.137 |
| SRR9715739 | Root | 8.231 |
| SRR9715742 | Root | 3.975 |
| SRR9715743 | Root | 4.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.643 |
| SRR8749028 | MeJA induced 9h | 5.371 |
| SRR8749029 | MeJA induced 9h | 3.530 |
| SRR8749030 | Uninduced | 4.482 |
| SRR8749031 | Uninduced | 3.978 |
| SRR8749032 | Uninduced | 5.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.842 |
| SRR8400027 | Control - Root | 11.540 |