Gene detail

Gene detail information of Glyur002800s00040136

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G26880.1	3.00E-23	Ribosomal protein L34e superfamily protein
NR	ADR71241.1	8.68E-28	60S ribosomal protein L34A [Hevea brasiliensis]
COG	YP_003150937.1	6.00E-14	cysteine synthase [Cryptobacterium curtum DSM 15641]
Swissprot	tr\|P40590\|RL34_PEA	2.00E-29	60S ribosomal protein L34
trEMBL	tr\|I3NMK4\|I3NMK4_HEVBR	3.00E-28	60S ribosomal protein L34A {ECO:0000313\|EMBL:ADR71241.1}

Sequence

Transcript Sequence

>Glyur002800s00040136.1
ATGGAGACGGAAAGGAGAGGGCTAGTGAGAGAAGCAGATTCGACGGTTATTCGAGGAAGTCGCGCGTTCGAGCTTCGTCACCGTTCGCGACCAGAGCCTATGCGCGCGCCGTTCTCCATTCACGACCTGCATTCTCTGTCCCGTTCTGTTCCGTTCGTGCTCGTGCTCCNGCCGTTCGTGCTCACGTTCGTCACTCACTTTCCTATACACCACCACGCCCCTCTTTCCCATTTTCCAGTTCTTGGTTTCACTGCCACCACCATCATCATGGTGCAAAGGCTCACATATCGTAAGCGGCACAGTTATGCCACCAAATCCAACCAGCACCGCGTTGTTAAGACCCTTGGTGGGAAGTTGGTGTACCAGACCACTAAGAAGAGAGCAAGCGGACCTAAGTGCCCTGTCACTGGGAAGAGGATCCAAGGGATCTGGTGTTATGCCACAATTTTTGGCAAGTATGCCACAGTTGATGCCCTTGTTTCTGGTACAGGGACTGGAGGTACAGTTACAGGTGCTGGGAAATATCTGAAAGAGCAGAACCCTGATATCAAGCTATTTGGTGTTGAACCACTTGAAAGTCCAGTATTGTCTGGTGGGAAACCTGTTATCCAAGTGGGGATATCATCCGGTGCTGCTGCAGTTACTGCAATTAAGATTGCAAAGAGGCCGAAAAATGCTGAAAAACTCATTGTTGTAAGTTTGTGATCTGCTCATTTGGTAATAGATATTCATTCTTCTCTGGCTATATAAGATATTAAAGGGGGCTTAGATGTAATATCAACTGAGGTTTAGATTGGAAAAAAAAATCTGGATATTAACACATTGTANCTGTATTATGAATTATGTTATTTAATTCTAACTGAGACTGATATTGCCCTCAAATTTTAAAATGTTTACATATATTGGTTCTAAGAGGTACTACTATGTGGACTATGATGCTTCAGATACAAAAGAATAGATNTGGTGTTATGCCACAATTTTTGGCAAGTACATGATTGTAGAATGAAGTAGGCTAGAATACAAACTGCCCTTTCTTATGAATGTAGTATTTATTTTTCTGTTTTTCTTGTATTTCAATTTTTTTACTATTAAATATGATTCTTTGAAAGTAATTTAGAAGTTTGGAGAAGATGATCCTTTTCTCTGCAAGAAATACATTAAACTTNTTGTAGCTAGTGTTTTATTACTTGGTCANGTTGCATGCACATATTTAGTATTTTGCTACTTATTGGTAGTGGATTGTTTGTTAGCTCATTTGTATATGTAACAATGGTTATTTTGAGGTATAATTTAAGTAGCTCACTGTTTTTGTGGTATTTATTCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02800	21883	25918	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002800s00040136.1	PF01199.13	Ribosomal_L34e	90	146	1.60E-16
Glyur002800s00040136.1	PF00291.20	PALP	156	222	2.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.105
SRR1783600	control	10.509
SRR1783602	moderate drought stress	44.811
SRR1811619	moderate drought stress	44.265

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.598
DRR006520	Root Summer glycyrrhizin high producing strain	11.549
DRR006521	Root Winter glycyrrhizin high producing strain	19.204
DRR006522	Root Winter glycyrrhizin high producing strain	18.160
DRR006523	Root Summer glycyrrhizin low producing strain	0.661
DRR006524	Root Summer glycyrrhizin low producing strain	0.695
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.828
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.971

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.333
SRR2868004	Drought Stress (root)	2.156
SRR2967015	Control (root)	3.653

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.922
SRR9715740	Leaf	10.768
SRR9715741	Leaf	17.852
SRR9715739	Root	3.077
SRR9715742	Root	8.865
SRR9715743	Root	7.896

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.659
SRR8749028	MeJA induced 9h	2.365
SRR8749029	MeJA induced 9h	2.307
SRR8749030	Uninduced	2.210
SRR8749031	Uninduced	1.014
SRR8749032	Uninduced	2.057

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.704
SRR8400027	Control - Root	28.009