Gene detail information of Glyur002798s00039291 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_003604302.1 | 1.03E-48 | HGWP repeat containing protein-like protein [Medicago truncatula] |
| trEMBL | tr|A0A072U5E5|A0A072U5E5_MEDTR | 4.00E-32 | Uncharacterized protein {ECO:0000313|EMBL:KEH24862.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02798 | 4256 | 7430 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002798s00039291.1 | PF03004.9 | Transposase_24 | 6 | 42 | 4.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.049 |
| SRR1783600 | control | 0.040 |
| SRR1783602 | moderate drought stress | 3.938 |
| SRR1811619 | moderate drought stress | 3.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.608 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.888 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.567 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.010 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.891 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.118 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.705 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.049 |
| SRR2868004 | Drought Stress (root) | 0.033 |
| SRR2967015 | Control (root) | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.366 |
| SRR9715740 | Leaf | 1.674 |
| SRR9715741 | Leaf | 1.110 |
| SRR9715739 | Root | 0.159 |
| SRR9715742 | Root | 1.793 |
| SRR9715743 | Root | 0.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.029 |
| SRR8749028 | MeJA induced 9h | 0.040 |
| SRR8749029 | MeJA induced 9h | 0.042 |
| SRR8749030 | Uninduced | 0.008 |
| SRR8749031 | Uninduced | 0.031 |
| SRR8749032 | Uninduced | 0.040 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.623 |
| SRR8400027 | Control - Root | 9.446 |