Gene detail

Gene detail information of Glyur002795s00038392

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G17160.1	4.00E-104	pfkB-like carbohydrate kinase family protein
NR	XP_003638398.1	0	Ribokinase [Medicago truncatula]
COG	YP_720744.1	4.00E-44	ribokinase [Trichodesmium erythraeum IMS101]
Swissprot	tr\|Q9LNE3\|SCRK2_ARATH	7.00E-11	Probable fructokinase-2
trEMBL	tr\|G8A248\|G8A248_MEDTR	0	Ribokinase {ECO:0000313\|EMBL:AES85536.1}

Sequence

Transcript Sequence

>Glyur002795s00038392.1
CAATCCTTTTGCAAAAAACAAAAGTAGTCCAACAAAGTGACCTTTTCCTCGGAACTCGACCGTGAGGCCGTTGTGGGTAGTAGTGGTGAGATCGAGATTCGAAGTGCAAGGAATGATGACCCAAACGGCGCTTTCACCATTAAACCACTGGCAACCCACAACGCGATTAAACACAAACAGTTCCACCTTCACCACTTCCATTAACCCAATCCAATTCCTCCACACAAGTCGGCGACACTACAAGCTTCCAGTCTTGTGTTTCAGCGCGGACCCCTCATCGTCGCGGGCCCCACCACCTCCCGTTGTGGTGGTGGGGTCCGCCAACGCCGACATCTACGTGGAGATCGACCGGCTCCCGAGGGAAGGCGAAACGGTCTCCGCAAAAAGCGGCCAGACCCTCGCCGGCGGGAAGGGCGCCAACCAGGCTGCGTGCGGCGCCAAGCTCTCCCACCCCACCTACTTNGTCGGCCAGGTAGGCGGCGATGCCCACGGAAACCTCGTCGCCGACGCACTCCGTGACGGCGGAGTACGCCTCGACCACCTCGCCGTCGTTCCCTCCGCTCCGACCGGACATGCCGTCGTCATGCTCCAGTCCAGTGGCCAGAACTCCATCGTCATTGTCGGCGGCGCCAATGTGAGCTGCTGGCCCCACACACTGCCACGTCAGCATCTCGAGCTTGTCACCTCCGCTGGGATCGTTCTGTTACAGAGGGAGATCCCCGATTTTGTCAATGTTCAAGTGGCCAAGGCTGCAAGGAATGCTGGTGTCCCTGTAATATTGGATGCCGGGGGCATGGATACACCAATGCCACAAGAATTGCTGGATTTTGTTGATATTTTGAGTCCTAATGAAAGTGAACTTGGTCGCCTTACAGGAATGCCAACTGAAAGTTTTGAAGAGATTACACAGGCTGCTGTAAAATGCCATAAATTGGGAGTTAAGCAAGTTCTTGTGAAACTTGGGCCCAAAGGATCTGCCCTTTTCATAGAAGGAGAAGAACCAATTCAGCAACCTGCCATCCTTGCTAAAACAGTCATTGATACAACTGGAGCTGGTGATACTTTTACTGCTGCTTTTGCTGTGGCCTTAGTTGAGGGCAAGTCCAAAAGGGAATGCCTCAGATTTGCCNAGATCACAACATGGAACAGGAGCAGAATAACTGTGCATGGCACAGAGGGAAAGATCATTGAAAATGACAAGGAAAGCAAAACTTTTCTGAAGAAGCATACTTGTACAAGATGGACACTTCAGGGTAGTATTCTCAGAATGTTTACCGATGTTGGCAGGGAAAAAGGTGAAGTGAGAGATTTGGCTTCACAGTGGAGGAGATTTGGCTTCACAGTGGAGGGTGAAGAGGTGGGAAGGGTTGAAGCTAGGGAAGATGATGGTGTGGATGCATGGAGGGGTAATGTGGGTTCAAACCACCCACTTAGTGAAAATGAATCCCATTGGCTCCTGTCATGCACTCTTGCACACCACCACCTCCCTTTTTTGGTTAGACATGGACCAATATGTAAATTGATTCAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02795	17097	20976	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00852	rbsK, RBKS	EC:2.7.1.15	Pentose phosphate pathway	map00030

Gene Ontology

biological_process
GO:0006014 D-ribose metabolic process

molecular_function

GO:0004747 ribokinase activity

GO:0016773 phosphotransferase activity, alcohol group as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002795s00038392.1	PF00294.19	PfkB	64	339	1.10E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.355
SRR1783600	control	16.119
SRR1783602	moderate drought stress	27.960
SRR1811619	moderate drought stress	28.012

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.736
DRR006520	Root Summer glycyrrhizin high producing strain	20.809
DRR006521	Root Winter glycyrrhizin high producing strain	12.696
DRR006522	Root Winter glycyrrhizin high producing strain	10.815
DRR006523	Root Summer glycyrrhizin low producing strain	15.359
DRR006524	Root Summer glycyrrhizin low producing strain	15.239
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.646
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.299

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.967
SRR2868004	Drought Stress (root)	10.313
SRR2967015	Control (root)	11.847

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.905
SRR9715740	Leaf	5.240
SRR9715741	Leaf	4.815
SRR9715739	Root	8.684
SRR9715742	Root	12.763
SRR9715743	Root	10.944

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.967
SRR8749028	MeJA induced 9h	8.550
SRR8749029	MeJA induced 9h	5.876
SRR8749030	Uninduced	2.508
SRR8749031	Uninduced	1.273
SRR8749032	Uninduced	2.153

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.275
SRR8400027	Control - Root	20.801