Gene detail

Gene detail information of Glyur002795s00038391

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G53140.1	4.00E-162	O-methyltransferase family protein
NR	XP_006594704.1	0	PREDICTED: caffeic acid 3-O-methyltransferase-like isoform X1 [Glycine max]
COG	YP_007203453.1	2.00E-31	16S RNA G1207 methylase RsmC [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q9XGV9\|COMT2_OCIBA	9.00E-81	Caffeic acid 3-O-methyltransferase 2
trEMBL	tr\|I1M2U5\|I1M2U5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G33830.1}

Sequence

Transcript Sequence

>Glyur002795s00038391.1
CTCAAATCTCTCGCTCTTCATTGATAGTGGATACAATCTATTTTTTTAATATGTACACGACATACTAGTATGCGTCCTTTTTTTTATGTTATATACCAAACTTGTATGCATGCAGCATGACTTAAATTCCATCAACAACNCCATCGATTTTACAACAGGGTATGCAAATGCAATCCTTCCGAAGCTTGTCCCCTTTCTATGCGNCGGTGGTGACATTCCACCCTTTAATAGTTGAACTTTTTGGGGGCTTTAACTAATTGTTTTGCTTGTGAATATCCTCTGCAACCTGCTTATTGATGGCCATTATTAGGAAAATGGATGGATGAGTTCAGTTCAGGNCCCATGTTCATCATGTGCACCTGAGTCACACACTCACACGGACAGAGTGACACGTCAATTTCACCTAACCTCTTTTTTTTTTTTGGACTTTTTGGATTTTTTTGACCTTTCGCACTCTCTTACAACCCAATACATGTACTATATAAATTTCAATCATGTTGAGGGAGTGTTTTGTTAAATTAGGTTCAAATTAAACTTGAAAAAAAGAAGCCACATGAGCAGTAACAAAATCAAACAGGGGACGATGGAGGAGGAAGACAGAGAATCGCGAAAGCAAGCGAGGCTGGCGATTCTGGAACTGGCGAACATGATAAGNGTCCCCATGTCCTTAAACGCCGTCGTACGCCTCAACGTCGCAGATGCCATCTGGCAAGGCGGCTCCAACGCCCCTCTCTCCGCCGCCCAGATCCTCTCCCGCGTCCTCCCCGGCGGCGGCGGNGACGCCGAGAACCTCCAGCGCGTGCTCCGCATGCTATCCAGCTACGGCGTNTTCGAGGAGCACATCGACGGCGGCGAAAGGAAGTACTCCCTCACCAACGTCGGCAAAACGCTCGTCACCGATGAACAAGGCCTATCCTACGCGCCTTACGTTCTCCAACACCACCAGGATGCGTTGATGCGAGCATGGCCATTGGTTCACGAGGCAGTGGTGGACCCTACGAAAGAGCCCTTCGAGAGGGCCAATGGAGAAGCAGCGTACGGGTACTACCTGAAGCAACCCGAGATGAATGAGTTAATGTTGAAGGCCATGTCAGGGGTATCAGTGCCCTTCATGAGGGCCATGCTGGAGGGCTACGATGGCTTCCAAGGTGTAAAGAAACTAGTGGATGTNGGTGGCAGTGGCGGTGACTGCCTCCGCATGATCTTGGAGAAACACCCCAACATCAAAGAAGGGATAAACTTTGACCTCCCTGAAGTTGTNGCCAAAGCACCACAAATTCCAGGAGTAACCCATGTGGGTGGTGACATGTTCAAATCTATTCCCCAAGGCGATGCTATCTTTATGAAGTGGGTGCTAACAACATGGACCGATGAGGAATGCAAGAACATAATGCAGAGCTGTTACAAGGCACTCCCAGAGGGAGGCAAACTAATAGCTTGTGAGCCAGTGCTTCCGGAGAACTCCGATGATAGTCACAGAACAAGGGCATTGCTTGAGGGAGACATATTNGTGATGACAATCTACAGAGCCAAAGGGAAGCACAGGACTGAAGAACAGTTCAGGCAGCTAGCCATTTCTGCAGGCTTCCCTTGTTTCAGAGCCTTTCATGTCGACCATTTCTATACTGTCCTTGAGTTTCAGAAATGAAAAGCAACTGCTCTTCTGGGTTTCCATGATTTTTGTAGACTTTCGTATTATTATGTAGTTGGTGATAATTATTGTGATTCTGTTCTTGTGTCTACAATACTCANGAGAAACCATGAATCCATGACATTGGAACAAAATAATTAGGAGCAGTGGGTCAATTTTTTGAGAATTGTGATATTCTTGAATATATAAGAATGCTTAACTAAGATGCAGAATGGCACTGGGTNCAATTAATCTGTTGTCTACGGGTGGCAAATTCACTTGAGCAGCTAGCTNACCAATGCAGTGGCTATAATGTGTTGTGTTTTGATTGTTATTACTTTTTTTTGGAAAATGGAGAAAACAAAAAGAAAAGAACCAAAAACGAAAAGCTAAGGCCTAACAAAAGGGATCTCCCTTCTATCTCCAAGCAGAAAGCTCAGCAGCGCATGCGGAGGAGCCTCAAGCAGCAGCATCCTGATTACTGATTAGCACCCATCTTAGCAAGGAAATCAGCACAAAAATTTCCTTCCTGAGTGTGTCGCCACTCACAAGTGCACCATCCAATTTTTCTGCATCTCTCTAATATCAACGATGACAGGAGCATACTTTTGAAAGGGAAGAGCGACCCCTGTGATCAAGTTAATGGCATTCTGAGAATCAGAATAGCATATAACATACTTGATACCCCTCTCCCACGTAAAGCTCAGGCCAAAAAGGATGGCCATGAGCTCCACATGTAAGTTGGTAGAAATGCCAATATCACTAGTGAACCCAGCAATCCAAGAGCATGAGAAACCCACCTATTCTTCCTCTAGAAGAAGCCCCTATTACAGGTTGGATAAAAGAACCTCTATTTTTACATTTAAGTTTTCACACCTAGTTTTTATATTTCCAACTTGCACAAGTAGAGTATAATTTGCTTGGAATCTTGCTGCTTTTTGTGTGTGTATGATTGCTCAAAAAAAAAAACGATTTTCATGTAAACACATACATAGTCTTGCTACAAATTATATGCCAACATCTGCATTTTGGCCAAAATTTCAGAGTAGCCATTTCTAGATAATAACTAGCAGATACAAAATTATACCATATAAGACATAAGTTATATACAGTAAGCCAAANAAAAAAATATTCAAGACCTGTACCACTTGCTGTTGTAGCCTAATCATGCTGAAAAGTCAACAATAGCAAAGTTAGAGAAAGCTTTCTTAAATGAGAATAGCTTCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02795	8796	13362	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0008168 methyltransferase activity

GO:0008171 O-methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002795s00038391.1	PF00891.13	Methyltransf_2	101	340	6.10E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.652
SRR1783600	control	11.634
SRR1783602	moderate drought stress	7.307
SRR1811619	moderate drought stress	7.303

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.476
DRR006520	Root Summer glycyrrhizin high producing strain	13.356
DRR006521	Root Winter glycyrrhizin high producing strain	12.762
DRR006522	Root Winter glycyrrhizin high producing strain	12.520
DRR006523	Root Summer glycyrrhizin low producing strain	5.803
DRR006524	Root Summer glycyrrhizin low producing strain	5.788
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.172
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.997

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.605
SRR2868004	Drought Stress (root)	37.455
SRR2967015	Control (root)	26.639

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.181
SRR9715740	Leaf	32.047
SRR9715741	Leaf	46.019
SRR9715739	Root	9.313
SRR9715742	Root	14.994
SRR9715743	Root	13.342

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.904
SRR8749028	MeJA induced 9h	20.218
SRR8749029	MeJA induced 9h	13.812
SRR8749030	Uninduced	22.245
SRR8749031	Uninduced	6.277
SRR8749032	Uninduced	11.224

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.008
SRR8400027	Control - Root	19.942