Gene detail

Gene detail information of Glyur002794s00040886.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G25560.1	2.00E-101	AP2/B3 transcription factor family protein
NR	ACI46678.1	0	DNA-binding protein [Galega orientalis]
Swissprot	tr\|Q9C6M5\|RAVL1_ARATH	8.00E-136	AP2/ERF and B3 domain-containing transcription repressor TEM1
trEMBL	tr\|B6EBS5\|B6EBS5_9FABA	0	DNA-binding protein {ECO:0000313\|EMBL:ACI46678.1}

Sequence

Transcript Sequence

>Glyur002794s00040886.1
ATGGAATTGGGCAGTTGCACGGACGAAACCNCCACCACAAGCAGTGACCACTCCCTTTCCGTATCCCTTCTTCCGGNGAAACTATCTCCGCCGCCGCCGAACACGCTCAGCCGCGTCGGCAGCGGCGCCAGCGCTGTTGTGGACCCCCACTTTTGCGGCGGCTCCGGCGAGGCCGAATCCCGGAAACTTCCGTCGTCGAAATACAAAGGCGTGGTGCCTCAGCCCAACGGGCGGTGGGGCGCTCAGATTTACGAGAAGCACCAGCGCGTGTGGCTCGGCACCTTCAACGAGGAAGACGAAGCCGCCAGAGCCTATGACATCGCCGCCCAGAGGTTCCGCGGCAAAGACGCCGTAACCAACTTCAAGCCACTCGCCGGCGCCAGAAACGATTCTGACGACGCCGAAACCGAGTTCCTCAACTCGCATTCCAAGTCCGAGATCGTCGACATGCTCCGGAAGCACACCTACGACGACGAGCTCCGGCAGAGCAAGCGAATCTCGTGCGGCGGGAGGCAGCGGAGCAACGCCGAATCGGCTTCGCTCGCGTCGGGCGGCGCGAAGGCGCGTGAGCAGCTGTTCGAGAAAACGGTTACGCCGAGTGACGTGGGGAAGTTGAATCGGTTGGTGATACCGAAACAGCACGCGGAGAAGCACTTCCCGTTAGGTGCCGCCGCCGTCGTCGCCGACGAAGGAGTCTCGCCGTGCGTGTCGGCGGCGACGAAGGGGTTGCTTTTGAACTTCGAAGACGTTGGAGGGAAAGTGTGGCGGTTCCGCTACTCGTATTGGAACAGTAGCCAGAGCTACGTGCTAACGAAAGGGTGGAGCCGGTTCGTGAAGGAGAACAACCTGAGAGCCGGTGATGCGGTTCGGTTCTTCAGGTCGACCGGACNGGACAGGCAGCTCTACATAGACTGCAAGGCCAGTAGTAGTGGTGGTGTGAGTGTCGGTATTGCTGCCATTGGTAAGGTTGATAACAATACGGGTGGTTTGATTATTCCGGTCCAACCGGTTGTGGAGCCGGTTCAGATGGTTCGGCTTTTTGGGGTCAACCTTTTGAAACTACCCGGTTCTGATGGTGTTGGTGGTGGCTGTAANGGGAAGAGGAAAGAGATGGAACTGTTTGCTTTGGAATGCAGCAAAAAGCCAAAGATAATTGGAGCTTTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02794	28540	29706	-

Gene family

Gene family	subfamily
Transcription Factors Family	RAV

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002794s00040886.1	PF00847.15	AP2	66	114	2.20E-11
Glyur002794s00040886.1	PF02362.16	B3	193	297	3.50E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.754
SRR1783600	control	15.782
SRR1783602	moderate drought stress	22.137
SRR1811619	moderate drought stress	22.143

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.705
DRR006520	Root Summer glycyrrhizin high producing strain	3.639
DRR006521	Root Winter glycyrrhizin high producing strain	241.786
DRR006522	Root Winter glycyrrhizin high producing strain	236.767
DRR006523	Root Summer glycyrrhizin low producing strain	17.889
DRR006524	Root Summer glycyrrhizin low producing strain	19.060
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.099
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.028

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.923
SRR2868004	Drought Stress (root)	34.156
SRR2967015	Control (root)	65.803

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	73.859
SRR9715740	Leaf	84.215
SRR9715741	Leaf	80.975
SRR9715739	Root	23.980
SRR9715742	Root	36.871
SRR9715743	Root	38.245

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	119.876
SRR8749028	MeJA induced 9h	157.766
SRR8749029	MeJA induced 9h	132.767
SRR8749030	Uninduced	71.572
SRR8749031	Uninduced	54.546
SRR8749032	Uninduced	101.249

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.870
SRR8400027	Control - Root	32.330