Gene detail

Gene detail information of Glyur002772s00034591.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G49720.1	9.00E-103	glycosyl hydrolase 9A1
NR	XP_004502591.1	0	PREDICTED: endoglucanase 25-like [Cicer arietinum]
COG	YP_290232.1	2.00E-47	endoglucanase [Thermobifida fusca YX]
Swissprot	tr\|Q38890\|GUN25_ARATH	9.00E-124	Endoglucanase 25
trEMBL	tr\|G7J672\|G7J672_MEDTR	0	Endoglucanase {ECO:0000256\|RuleBase:RU361166}

Sequence

Transcript Sequence

>Glyur002772s00034591.1
ATGATGCCACCAACAGAGTCAGAGTCAGAGAATCAACATGTGAGATATGTGCACACAGTTTCAGAGGCAGGTCGACTTCTTCCTTCATCTAGCCGCTGGAACTCCATAGCACTTGACCTCAACCTTGCCCCTAAAAAGTCTTCTTCTTCTGTTGCCTATGAATCCATCCCTTCCCAATACCCGAAATCTTATGATTACAATCTTGTCGTCACTGATAGGAAGCACTTCCACCGTTTTGTTTTTGTTCTAGTCACAATAATCTTTGCCATCATAGCAGTGGCTCTGCTGGTGCACTTTTTACCTCAGAAGCACAAGCACCAAGGGTCTTCAATCAATCTCAAACTTGCAATAAACCAGGCTCTAACATTTTATGATGCCCAAAAATGTAAGAATGCTTTTAAATTGCAGCCCGCAACCGTGATTGCGGCCGCAACGAACAGTCCAGTGAAATTTCGGGGAGATTCAGGATTGAAGGATGGGAATTCAGCTAAGACTAATCTTACTGGTGGATATTATGATTCTGGCAACAACATCAAGTTTACCTTCACCACTGCTTATACCATGACCTTGTTGAGTTGGACTGCAATGGAATATCAAGGTAAATATGCTGATATTGGTGAGCTTGACCACATCAGGGACATCATCAGATGGGGTAGTGACTACTTGCTCAAGGTTGGAAGTACCATTAGTACTAACAATGAGGCCAATGATATAAGTTGTTGGGAACGACCTGAAGACATAGATTATGAGAGGCTGGTTTCAATTTGTGATGGCTCTGCCTCAGATTTAGCTGGTGAAATTGTGGCAGCATTATCTGCAGCATCAATGATATTCAGAGAAGACAAAGATTACTCAGGGAAACTAGTCCAAGCAGCAGAAACTGCATATGAGGCAGTCACAAGGGAAGATCCTAAGAAGCAACAAGGAACCTACACCAAGGTTGATGCATGTGGAAAACAAGCAAGGATGCTTTACAACTCAACTAGTTACAAAGATGAGTTGGCCTGGGGAGCAACTTGGTTATTTCTTGCTACCAGAAACACTGATTATCTTTTAAATGCAACTGAGTTTTTTTTATCAGCAAAGGGTGATGAAACAAATATTGACAAAGGGGTCTTTTATTGGAATAACAAGCTCAATGCTGTTGCGGTTTTGCTTGCGGGTATTCAATACTTCCATGATCCTGGCTTTCCATATGAAGATGTTTTGAAACTTTCATCAAACTCTACAGACTCCCTCATGTGTTCTTATCTATTCAAAAAATATATGAGCAGAACACCTGGTGGATTGATTATCCCAAAACCTGATAATGGGCCATTACTCCAATATGCTGCAACAGCATCTTTTCTCAGTAAATTGTATAGTGATTACCTTGATCATCTCAAAGTGTCTGGTGCAAGTTGCGAAACCGATGAATTCTCAGTGACAATGCTTCAAGATTTTGCGACTTCTCAGGCAAATTCCCAGCTTCCTGTTAACTACATCTTGGGACAAAATCCGATGAGAATGAGCTATGTAGTGGGCTATGGTGATAGGTTTCCAGTCCAAGTTCATCACAGAAGTGCATCAATCCCTTGGGATAACCGGCGCTACGATTGTGACGATGGTAAGAGATGGCTAAACTCTAAAGATCCGAATCCGCAAGTTCTTTTGGGAGCCATGGTGGGAGGGCCAGACACAGATGATAAGTTCACTGATCAAAGGAGCAACCAAAGGTTCACTGAGCCAAGCATAGCAAGCAATGCTGGCTTAGTTGCAGCATTGATTGCCCTTCAAGATCCTCCTTATAATTCACTTGACTTGAAAAACTCGTTGTGGGAATGGACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02772	11218	14044	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH9

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01179	E3.2.1.4	EC:3.2.1.4	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002772s00034591.1	PF00759.14	Glyco_hydro_9	115	588	3.90E-104

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.041
SRR1783600	control	0.040
SRR1783602	moderate drought stress	0.008
SRR1811619	moderate drought stress	0.021

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.059
DRR006520	Root Summer glycyrrhizin high producing strain	0.058
DRR006521	Root Winter glycyrrhizin high producing strain	0.060
DRR006522	Root Winter glycyrrhizin high producing strain	0.059
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.116
SRR2868004	Drought Stress (root)	0.269
SRR2967015	Control (root)	0.273

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.073
SRR9715740	Leaf	0.033
SRR9715741	Leaf	0.000
SRR9715739	Root	0.135
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.088
SRR8749028	MeJA induced 9h	0.139
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.125

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.086
SRR8400027	Control - Root	0.140