Gene detail information of Glyur002772s00034590 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25940.1 | 1.00E-27 | TFIIB zinc-binding protein |
| NR | XP_004501608.1 | 4.29E-72 | PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like isoform X1 [Cicer arietinum] |
| COG | YP_004780304.1 | 3.00E-13 | transcription termination factor Tfs [Pyrolobus fumarii 1A] |
| trEMBL | tr|G7JQD3|G7JQD3_MEDTR | 3.00E-70 | DNA-directed RNA polymerase subunit {ECO:0000256|PIRNR:PIRNR005586} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02772 | 4822 | 9022 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002772s00034590.3 | PF01096.13 | TFIIS_C | 77 | 114 | 6.90E-19 |
| Glyur002772s00034590.4 | PF01096.13 | TFIIS_C | 77 | 114 | 6.90E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.412 |
| SRR1783600 | control | 23.563 |
| SRR1783602 | moderate drought stress | 31.866 |
| SRR1811619 | moderate drought stress | 31.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.916 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.541 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.573 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 39.978 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 40.417 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 39.980 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.924 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.812 |
| SRR2868004 | Drought Stress (root) | 16.610 |
| SRR2967015 | Control (root) | 20.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.893 |
| SRR9715740 | Leaf | 11.906 |
| SRR9715741 | Leaf | 12.157 |
| SRR9715739 | Root | 10.398 |
| SRR9715742 | Root | 9.785 |
| SRR9715743 | Root | 10.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 60.586 |
| SRR8749028 | MeJA induced 9h | 47.702 |
| SRR8749029 | MeJA induced 9h | 54.189 |
| SRR8749030 | Uninduced | 16.578 |
| SRR8749031 | Uninduced | 12.391 |
| SRR8749032 | Uninduced | 16.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.978 |
| SRR8400027 | Control - Root | 17.262 |