Gene detail information of Glyur002769s00032167 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47730.1 | 3.00E-125 | Sec14p-like phosphatidylinositol transfer family protein |
| NR | NP_001237505.1 | 0 | polyphosphoinositide binding protein Ssh1p [Glycine max] |
| Swissprot | tr|F4JVA9|SFH2_ARATH | 6.00E-25 | Phosphatidylinositol/phosphatidylcholine transfer protein SFH2 |
| trEMBL | tr|O48939|O48939_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G39890.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02769 | 29200 | 32674 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002769s00032167.1 | PF00650.15 | CRAL_TRIO | 86 | 241 | 3.70E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.271 |
| SRR1783600 | control | 19.281 |
| SRR1783602 | moderate drought stress | 13.542 |
| SRR1811619 | moderate drought stress | 13.214 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.269 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.361 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 41.697 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 40.335 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.158 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.588 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.375 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.543 |
| SRR2868004 | Drought Stress (root) | 26.835 |
| SRR2967015 | Control (root) | 20.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.661 |
| SRR9715740 | Leaf | 8.848 |
| SRR9715741 | Leaf | 17.551 |
| SRR9715739 | Root | 5.255 |
| SRR9715742 | Root | 10.170 |
| SRR9715743 | Root | 8.728 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.780 |
| SRR8749028 | MeJA induced 9h | 16.436 |
| SRR8749029 | MeJA induced 9h | 13.438 |
| SRR8749030 | Uninduced | 45.922 |
| SRR8749031 | Uninduced | 62.304 |
| SRR8749032 | Uninduced | 23.437 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.216 |
| SRR8400027 | Control - Root | 19.365 |