Gene detail

Gene detail information of Glyur002769s00032165.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47720.4	0	Thiolase family protein
NR	XP_003637597.1	0	Acetyl-CoA acetyltransferase cytosolic [Medicago truncatula]
COG	YP_006419299.1	2.00E-157	acetyl-CoA acetyltransferase [Aequorivita sublithincola DSM 14238]
Swissprot	tr\|Q9FIK7\|THIC2_ARATH	0	Probable acetyl-CoA acetyltransferase, cytosolic 2
trEMBL	tr\|G7ZZU7\|G7ZZU7_MEDTR	0	Peroxisomal acetoacetyl-coenzyme A thiolase {ECO:0000313\|EMBL:KEH32694.1}

Sequence

Transcript Sequence

>Glyur002769s00032165.1
ATGGCGTATTTAGCTTTCCAACGATCATTTCGGACGCCCCTCATGTCTTCAACCTCCACTTCTGTAAAATCCCGAGATGTTTGTATTGTTGGTGTTGCACGGACACCAATGGGNGGTTTCCTTGGCACCCTATCATCTCTTTCAGCTACAGAGCTAGGCTCAGTTGCTATTAAGTCTGCTCTCAAGAGAGCGAATGTCGATCCNTCACTTGTGCAAGAGGTGTTTTTTGGGAATGTTCTTAGTGCAAATTTAGGGCAGGCTCCTGCCAGACAGGCTGCATTAGGTGCAGGAATACCTACATCTGTTATCTGCACTACTATTAACAAGGTGTGTGCAGCGGGGATGAAAGCTACCATGCTTGCAGCACAAACCATACAGTTGGGTTTCAATGATATTGTTGTGGCTGGTGGTATGGAAAGCATGTCGAATGCACCTAAGTACATCGCAGAAGCAAGGAAGGGATCTCGGTTAGGACATGATACTATCATTGACGGTATGNTCAAAGATGGCCTTTGGGATGTCTATAATGACTTTGGCATGGGAATTTGTGCAGAACTATGTGCAGATCGGCATGCCATAACAAAAGATGAGCAGGACTCTTATGCTATTCAAAGCTTTGAGAGAGGAATATCTGCACAAAATGCTGGTCATTTGGCNTGGGAGATAGTTCCGGTTGAAGTTTCCAGCGGAAGAGGAAAGCCTTCCAAACGAGTTGATAAAGATGAAGGTTTGGGGAAGTTCGATGCTGCAAAGTTAAGGAAGCTTAGACCAAACTTTAAAGAGGTTGGTGGTACTGTGACTGCTGGCAATGCTTCTAGCATAAGTGATGGTGCTGCTGCATTAGTGCTAGTGAGCGAAGAGAAGGCACATGAGCTTAGATTGCATGTAATTGCAAAGATAAAAGGATATGCAGATGCAGCTCAGGCACCCGAATTATTTACAACTGCTCCTACCCTTGCAATACCAAAAGCCATATCAAATGCTGGTCTTAAGGCTTCTCAAATTGATTATTATGAAATAAATGAAGCTTTTTCTGTTGTGGCTCTCGCAAATCAGAAGCTTCTTGGTCTTAATCCTGAGAAAGTTAATGTACATGGTGGAGCTGTATCATTGGGGCATCCATTGGGTTGCAGCGGAGCTCGCATCTTAGTTACATTATTAGGGGTATTGAGACAGAAGAGGGGAAGGTATGGTGTTGGTGCCATCTGCAATGGGGGAGGAGGAGCATCCGCGCTTGTCGTCGAGCTCATGCCGGGCGCCACTTTGAGACGTTCCTCACTATGACGACGATCTCCTCACATCACTTTGCTTTAGAACACTTCCACAACAACTGTTTGCAGTTATGTCTTTTATTTATATCTAATAATAATAAAGGGATCAGTGCAGAGATGATAGGAGAGAAAAGAGAAGTCAAATATGTAANCTAAATTGTGATTAGGTGAAGAGTTATGTTTACATTTTGTTGAAATTTCACATCGATGAGAAATATGACCAATGTAGTCTCAATTCCTAAGAACANTGAATCAGGTCACACTTGTATTGCAACTACAAGAGCTTAACAGGAATACTNTAGTACCTAATAATTACCTTTCAACTAATTTCTAACTACACAAGGTAATCTCCTTTCGTTCCCCCNCAATTTGATCTCTCTTGACACAATATCTTTTCTTAATAGTCGGTGATTGATTTCTTTTGTAATAGCATCCAATTTCTTCCATAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02769	19282	23896	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00626	E2.3.1.9, atoB	EC:2.3.1.9	Carbon metabolism	map01200
			Fatty acid metabolism	map01212
			Pyruvate metabolism	map00620
			Glyoxylate and dicarboxylate metabolism	map00630
			Propanoate metabolism	map00640
			Butanoate metabolism	map00650
			Carbon fixation pathways in prokaryotes	map00720
			Fatty acid degradation	map00071
			Synthesis and degradation of ketone bodies	map00072
			Valine, leucine and isoleucine degradation	map00280
			Lysine degradation	map00310
			Tryptophan metabolism	map00380
			Terpenoid backbone biosynthesis	map00900
			Benzoate degradation	map00362
			Two-component system	map02020

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002769s00032165.1	PF00108.18	Thiolase_N	25	287	5.50E-92
Glyur002769s00032165.1	PF02803.13	Thiolase_C	295	415	1.10E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.437
SRR1783600	control	15.561
SRR1783602	moderate drought stress	21.027
SRR1811619	moderate drought stress	21.026

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.271
DRR006520	Root Summer glycyrrhizin high producing strain	30.777
DRR006521	Root Winter glycyrrhizin high producing strain	54.510
DRR006522	Root Winter glycyrrhizin high producing strain	53.146
DRR006523	Root Summer glycyrrhizin low producing strain	34.584
DRR006524	Root Summer glycyrrhizin low producing strain	35.218
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.249
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.224

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.589
SRR2868004	Drought Stress (root)	31.989
SRR2967015	Control (root)	29.853

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.515
SRR9715740	Leaf	21.064
SRR9715741	Leaf	26.691
SRR9715739	Root	8.120
SRR9715742	Root	17.168
SRR9715743	Root	15.243

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.864
SRR8749028	MeJA induced 9h	27.155
SRR8749029	MeJA induced 9h	26.196
SRR8749030	Uninduced	50.552
SRR8749031	Uninduced	40.261
SRR8749032	Uninduced	46.090

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.810
SRR8400027	Control - Root	24.512