Gene detail information of Glyur002766s00038231 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30200.3 | 1.00E-91 | vernalization5/VIN3-like |
| NR | XP_003615310.1 | 0 | Protein VERNALIZATION INSENSITIVE [Medicago truncatula] |
| Swissprot | tr|Q9SUM4|VIL2_ARATH | 3.00E-103 | VIN3-like protein 2 |
| trEMBL | tr|G7JYE8|G7JYE8_MEDTR | 0 | Protein vernalization insensitive-like protein {ECO:0000313|EMBL:AES98268.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02766 | 12505 | 17547 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.230 |
| SRR1783600 | control | 6.016 |
| SRR1783602 | moderate drought stress | 3.107 |
| SRR1811619 | moderate drought stress | 3.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.807 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.752 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.337 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.277 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.878 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.797 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.799 |
| SRR2868004 | Drought Stress (root) | 2.771 |
| SRR2967015 | Control (root) | 2.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.421 |
| SRR9715740 | Leaf | 0.555 |
| SRR9715741 | Leaf | 0.458 |
| SRR9715739 | Root | 1.144 |
| SRR9715742 | Root | 3.357 |
| SRR9715743 | Root | 2.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.320 |
| SRR8749028 | MeJA induced 9h | 2.370 |
| SRR8749029 | MeJA induced 9h | 2.719 |
| SRR8749030 | Uninduced | 0.394 |
| SRR8749031 | Uninduced | 0.053 |
| SRR8749032 | Uninduced | 0.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.128 |
| SRR8400027 | Control - Root | 5.865 |