Gene detail

Gene detail information of Glyur002762s00040584.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52360.1	2.00E-174	Coatomer, beta' subunit
NR	XP_004514667.1	0	PREDICTED: leucine aminopeptidase 2, chloroplastic-like [Cicer arietinum]
COG	YP_007124286.1	8.00E-57	leucyl aminopeptidase [Microcoleus sp. PCC 7113]
Swissprot	tr\|Q9C827\|COB22_ARATH	0	Coatomer subunit beta'-2
trEMBL	tr\|A0A061GBE0\|A0A061GBE0_THECC	0	Coatomer, beta' subunit isoform 4 {ECO:0000313\|EMBL:EOY26698.1}

Sequence

Transcript Sequence

>Glyur002762s00040584.1
ATGCCAATGTCGAAGTCGAAGCCACCCGTCACGCCAACGCTNCCTCCACCCAATTGACCAATTGTCTTACGATAAGTAAGAAAAAGCGTAGCGCACTCAAAAAATGGCATCATCAAGAGTAGTAGCAGCAGCTGTAGCATCATCCTTAACAGCATCCTCTACTCTCACTACTTCTTCATTCCTCCTTTCTTCCCGTCTCTCTCTTAGAACACTCACNCTAAAGCCCGCGTTGTTGTCACCACTGCCTCGTCTTTCTTTCTCTTCAGTACCTTCGCGCAAGCTCAACTTCATGGCTCGCGCCAATCTCGGCCTCACCCACCCCACCAACATCGAAACCCCTAAGGTCTCTTTTGCGGCGAAGGATGTTGATGACGTGGCTGAATGGAAAGGGGACCTGCTAGCCGTTGGAGTGACGGAGAAGGACGTGACGAGGGACGGCGAGTCGTCGAGATTCCAGAACCCGATTCTCAACGCGCTCGACTCCAAATTGGGCGGTTTATTGTCCGAAGCATCTTCCGAAGAGGACTTCACCGGAAAACCCGGCCAGTCNACGGTTCTCCGAATCGCTGCCGGAGGACTCGGATTCAAGAGANTCGCCTTGCTCGGCCTCGGCGCGTCGGCCTCCGGTCCCGCCCCCTTTAAGAGCCTTGGCGAGGCCGTTGCCGCCGCCGCCAAGTCCGCNCAGGCCGCCCATGTCGCCGTCGTTCTCGCCTCTTCAGAAGGACTCTCTGCCCAGTCCAAACTTAACACCGCTTCTGCAATTGCCTCTGGGACCTTGCTGGGAACATTTGAGGATAATAGGTACAAGTCTGAGTCAAAGAAACTGGCGCTTAAATCAGTTGACATTATTGGCCTTGGGACGGGGCCTGAATTGGNGAAGAAACTTAAGTATGCAGGAGATGTTTCTTCTGGAATCGTTTTCGGAAGAGAGCTTGTAAATTCTCCGGCTAATGTGCTTACACCAGGGGTATTGGCAGAAGAGGCATCTAAGATTGCTTCAACATATAGTGATGTTTTTACTGCNAAAATATTGGATGCTGAGCAGTGTAAGGAATTGAAAATGGGGTCCTATCTGGCTGTTGCTGCAGCCTCAGCAAATCCTCCTCATTTTATCCATCTGTGTTATAAACCTCCAAGTGGACCTGTCAATGTCAAGTTGGCATTAGTTGGAAAAGGTTTGACTTTTGACAGTGGTGGCTACAACATCAAGACAGGACCTGGCTGTATGATTGAACTCATGAAATTTGATATGGGTGGGTCTGCTGCAGTTTTCGGAGCAGCAAAAGCTCTTGCTTGTGAGAACATGATAAGTGGAACAGGTATGAGGCCTGGAGACATTGTTACAGCTTCAAATGGAAAAACTATAGAGACCATGGCCAAATCTTTTGAGGTCACTGAGTTACCAGTTAGATCGGCCAAGTTTGTTGCACGCAAACAGTGGGTTGTTGCTGGTGCTGATGACATGTTTATTCGTGTATATAATTACAACACAATGGATAAAGTCAAAGTATTTGAAGCACACACAGATTACATTAGGAGTGTGGCAGTTCATCCCACGCTTCCTTATGTTCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAAGGCTGGGACATTTCTCATTATGTCATGCAAGTGACATTTAATCCTAAAGACACAAACACCTTTGCTAGTGCGTCTCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCTGATCCTAATTTTACATTGGATGCTCATCAGAAAGGAGTGAATTGTGTTGATTACTTTACAGGTGGTGACAAACCTTATCTAATCACTGGTTCTGATGATCACACTGCCAAGGTATGGGATTATCAGACCAAAAGCTGTGTCCAGACCCTAGAAGGTCACACACACAATGTGTCTGCTGTATGCTTTCATCCTGAACTTCCCATAATCATTACTGGTTCTGAGGATGGTACAGTACGCATATGGCACTCAACAACTTATAGGCTTGAGAACACATTGAACTATGGCCTCGAAAGAGTTTGGGCTATTGGGTACATGAAGGGTTCACGTCGGGTTGTGATTGGATATGATGAAGGAACGATTATGGTCAAACTTGGCCGAGAAGTACCTGTAGCTAGCATGGACAACAGCGGGAAAATTATTTGGGCTAAACATAATGAAATTCAGACTGTCAATATAAAGAGCATAGGAGCAGATGCGGAAGAAAGGTTACCTTTGGCTGTTAAGGAGTTGGGCACTTGTGATCTTTACCCACAAGTTAACAACACAGATGCTGAGGGTAGGCTTACTCTGGCAGATGCTCTGGTGTATGCTTGTAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02762	2537	24364	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01255	CARP, pepA	EC:3.4.11.1	Glutathione metabolism	map00480

Gene Ontology

biological_process

GO:0006508 proteolysis

GO:0019538 protein metabolic process

cellular_component

GO:0005622 intracellular

GO:0005737 cytoplasm

molecular_function

GO:0004177 aminopeptidase activity

GO:0005515 protein binding

GO:0008235 metalloexopeptidase activity

GO:0030145 manganese ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002762s00040584.1	PF02789.12	Peptidase_M17_N	101	237	3.10E-22
Glyur002762s00040584.1	PF00883.16	Peptidase_M17	273	423	1.30E-50
Glyur002762s00040584.1	PF00400.27	WD40	466	502	1.60E-09
Glyur002762s00040584.1	PF00400.27	WD40	510	539	4.80E-05
Glyur002762s00040584.1	PF00400.27	WD40	547	583	7.90E-08
Glyur002762s00040584.1	PF00400.27	WD40	588	625	9.20E-14
Glyur002762s00040584.1	PF00883.16	Peptidase_M17	721	742	2.00E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	42.771
SRR1783600	control	41.696
SRR1783602	moderate drought stress	47.229
SRR1811619	moderate drought stress	46.576

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	59.282
DRR006520	Root Summer glycyrrhizin high producing strain	58.169
DRR006521	Root Winter glycyrrhizin high producing strain	27.416
DRR006522	Root Winter glycyrrhizin high producing strain	27.192
DRR006523	Root Summer glycyrrhizin low producing strain	53.633
DRR006524	Root Summer glycyrrhizin low producing strain	52.475
DRR006525	Leaf Summer glycyrrhizin high producing strain	43.156
DRR006526	Leaf Summer glycyrrhizin high producing strain	42.972

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.256
SRR2868004	Drought Stress (root)	40.373
SRR2967015	Control (root)	48.031

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.277
SRR9715740	Leaf	17.660
SRR9715741	Leaf	18.235
SRR9715739	Root	54.319
SRR9715742	Root	48.389
SRR9715743	Root	48.915

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.103
SRR8749028	MeJA induced 9h	56.548
SRR8749029	MeJA induced 9h	17.693
SRR8749030	Uninduced	11.580
SRR8749031	Uninduced	6.574
SRR8749032	Uninduced	7.698

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	62.507
SRR8400027	Control - Root	62.763