Gene detail

Gene detail information of Glyur002759s00037154

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01770.1	7.00E-105	vacuolar iron transporter 1
NR	XP_003630980.1	5.95E-160	Vacuolar iron transporter [Medicago truncatula]
COG	YP_007201664.1	2.00E-94	hypothetical protein Sinac_1590 [Singulisphaera acidiphila DSM 18658]
Swissprot	tr\|Q9ZUA5\|VIT1_ARATH	7.00E-141	Vacuolar iron transporter 1
trEMBL	tr\|G7LBG9\|G7LBG9_MEDTR	2.00E-160	Vacuolar iron transporter-like protein {ECO:0000313\|EMBL:AET05456.1}

Sequence

Transcript Sequence

>Glyur002759s00037154.1
AANAGTCTTNTGTACACNTATAGGCTTTGTTTGGATTGCGATATCAATTCGCACTTTGAAACACAGACAGAGGAGGTTCGCAGAAATGGCTGGTGCCGAACACAGACTAAGCCTGGAACCTGAGAAACAGGGCCTTCTGAACCGCCACACGGAGAAGCACTTCACCGCCGGCGATATCGTCCGCGACATCATCATCGGCGTCTCCGACGGACTCACCGTNCCCTTCGCCCTCGCCGCCGGTCTCTCCGGCGCCAATGCCACCTCCTCCATCGTCCTCACCGCCGGCATAGCCGAAGTCGCCGCCGGCGCCATCTCCATGGGTCTCGGAGGGTATTTGGCAGCAAAGAGCGAAGCTGATCATTACAAAAGAGAATTGAAAAGGGAGCAAGATGAGATCATTACCGTACCAGATACTGAGGCGGCTGAGGTAGCAGAAATATTGGCTGAATATGGGATAGAGGCACATGAATATGGGCCTGTGGTGAATTCTCTAAGAAAGAACCCTCAAGCATGGCTTGATTTCATGATGAAATTTGAGCTGGGTTTAGAGAAGCCAGATCCAAGGAGAGCATTGTATAGTGCAATGACAATTGCCATTGCTTACATATTGGGTGGCCTTGTTCCTCTTGTTCCTTACATGTTCATTCCAAGTGCAACAGAAGCAGTCCTGTTTTCAGTAGCGGTTACCTTGGTTGCATTGTTGGTCTTTGGCTTTGTCAAGGGATACTTCACGGGCAATAAACCTTTAAGGAGTGCTTTGGAAACTGCCCTAATTGGTGCCATTGCCTCTGCNGCTGCTTTTGGTTTGGCAAAGGCTTTCCATCCATAGTTTCATGCCTTTTGCACTTGATGGCAACCAAGAACTATTATTCCCAGCTTCATGGCTATTAGTTTTTACTTGTTGCAGCTTTTCATTTATAAACAACCACCCTTTTAACTTTTGATGTGAACTTTTGTGGTTAATATCACTCTGCATTTTAATCGGCTCTTTTGATAGCTCGCTTCATCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02759	6549	9223	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002759s00037154.1	PF01988.14	VIT1	31	243	3.90E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.542
SRR1783600	control	17.790
SRR1783602	moderate drought stress	8.664
SRR1811619	moderate drought stress	8.997

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.895
DRR006520	Root Summer glycyrrhizin high producing strain	3.193
DRR006521	Root Winter glycyrrhizin high producing strain	0.777
DRR006522	Root Winter glycyrrhizin high producing strain	0.970
DRR006523	Root Summer glycyrrhizin low producing strain	2.276
DRR006524	Root Summer glycyrrhizin low producing strain	2.396
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.030
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.432

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.558
SRR2868004	Drought Stress (root)	10.753
SRR2967015	Control (root)	7.456

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.575
SRR9715740	Leaf	12.857
SRR9715741	Leaf	24.871
SRR9715739	Root	28.469
SRR9715742	Root	18.418
SRR9715743	Root	17.625

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.988
SRR8749028	MeJA induced 9h	0.920
SRR8749029	MeJA induced 9h	2.552
SRR8749030	Uninduced	0.186
SRR8749031	Uninduced	0.110
SRR8749032	Uninduced	1.149

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	64.025
SRR8400027	Control - Root	48.376