Gene detail

Gene detail information of Glyur002759s00037152.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67970.1	2.00E-74	heat shock transcription factor A8
NR	KHN16520.1	0	Heat stress transcription factor A-8 [Glycine soja]
Swissprot	tr\|Q9S7U5\|HSFA8_ARATH	4.00E-93	Heat stress transcription factor A-8
trEMBL	tr\|I1KQD5\|I1KQD5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G05220.4}

Sequence

Transcript Sequence

>Glyur002759s00037152.1
NGGGGGTACGGGTGTGGGGAGGCGCAGCGAAATTTCACTTCTTCTTCGTCTAAGTTACAAGTGGGAACTGGGAAGTCATCCATACCTTCCCTTTCGGGTTTGCCTTCTCGATAGTGCCCTTTCTCTCTCTCTCTCTCTCTCTCTCTGAACTCAGAACTCAGAAGTAGTTGTTGTTTGTTAGACAGAGTGATGGTGGTGAAATCGAGTGAGAATGGTTCTGTCTCTGTGCCTCCTTTCCTGAACAAGTGTTACGACATGGTGGAAGACCCTTCCACCGACTCCGTCATCTCCTGGTCCCTCCCCGGTGGTGACAGCTTCCTCATCTCCGACGTTCCNCAATTCTCCGTCACCCTTCTCCCCAACTATTTCAAGCACAACAANTTCTCCAGCTTCATCCGCCAACTCAATATCTACGGTTTCAGGAAAATTGACACAGATCGCTGGGAATTTGCCAATGAAAACTTCATTAGGGGTCAAAAGCATTTGTTGAAGAATATACGCAGAAGGAAGCATCCACATGTTGCGGATCAGCAAAAACCATTGCCCCAGCAAGACACCTGTGATGAACCATCACAAGAAGCACCAAGTCATGGCCTTTGGAAAGAAGTTGAGAATCTCAAATTGGATAAAAATTCCCTCACGCAGGAGATGGTCAAACTTAGGCAGCACCAGGAATCTTCTGATAATAAGTTGCTGCTCNTGAGTGATCGCCTTCAAGGAATGGAGGAGCATCAGCAGCAGATGCTGTCATTCTTGGTCATGGTNGTGCAAAGCCCTGGGTTCATGGTTCAGCTGCTTCAGCCTAAGGAAAAAAANTGGCGTTTGGCTGAAGCAGGGAATATGTTGGACCAAGGTAAACAAGATGATAAACCAGTTGCTTCTGATGGGATGATTGTAAAGTATAAGCCACCTGTAGGTGAAAAACGAAAGCCTGTAGTTCCACTATCTCCTCGCTTCGATAAGCAACCAGAAACTGAGTTTTCTGCAGATGGGTTAAAAGATTTGTGCATCAGTTCTGAATTCTTGAAATTGCTTCTGGATGAAAAATTGTGTCCATTAGACAATCATTCTCCATTTCTTCTACCAGATTTACCTGATGATGGTTCATGGGAACANCTTTTTCTAGGTAGTCCAATCGTCGGAAACGTTGAAGATACTGATCATGAAAGTGAGGAGCCCATTGTTAGTGGAATGGAGATGGAACCCANTATATCTGAAACTCCAATTGAAAAATCTCAGGCTTTTGAATCGATGATTGTAGAAATGGAGAAAACTCTAGCGTGAGTTGGGATTATATGCTGATGGGGATATATTAATTTGATGGGGCCAGAGTTTGGGATATCAAACTGAGTAATGGAACTTCTANCTTCCAAAACTAACTATATAGAGGGAGGGAAGTAATAATGTCCGGCAGATATTTTTCAGCTGGGCTGTCTTCACAGATTTCCTCGCGCTATTNTTATAGTATTGAGTCACAATATAAGTATTTTTTCTGTCATCTTCCTCCAGCAGTTGTTAGATCCTCATCTGGATGCAGTATTTTGGCTTCTTGATATGGTGTCCAATCCCGGCGGGAATTGTATGGTCTTGCGGCTAGGATGATGGATCAAATATTTCTTATCAAGTTTAAATTGTATGAAAAAGCGGNCTCGAAGGAGCTTTATTTTTTGTTGCCACTTTAAACAGTGGCGCATGCCTTCATACCATATATATTATAAAGTTCATATAATGAATAGAAATNATGGTTTCTTAGCATATTAGTGATTAAGCCAGTGCTTCTCACTATGTTGTTCTCTTCTCTTTCAATCTCTAGTTTCTTGTATGAATTTTGCTCCTACTCTCGTGTCTGATATGGCGGAAGATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02759	818	3882	+

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002759s00037152.1	PF00447.12	HSF_DNA-bind	16	108	1.40E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.042
SRR1783600	control	18.376
SRR1783602	moderate drought stress	22.992
SRR1811619	moderate drought stress	22.749

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.100
DRR006520	Root Summer glycyrrhizin high producing strain	22.384
DRR006521	Root Winter glycyrrhizin high producing strain	34.752
DRR006522	Root Winter glycyrrhizin high producing strain	33.608
DRR006523	Root Summer glycyrrhizin low producing strain	30.055
DRR006524	Root Summer glycyrrhizin low producing strain	31.382
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.455
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.433

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.305
SRR2868004	Drought Stress (root)	24.936
SRR2967015	Control (root)	22.796

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.304
SRR9715740	Leaf	40.444
SRR9715741	Leaf	41.809
SRR9715739	Root	17.130
SRR9715742	Root	29.776
SRR9715743	Root	24.482

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.537
SRR8749028	MeJA induced 9h	28.509
SRR8749029	MeJA induced 9h	25.019
SRR8749030	Uninduced	14.482
SRR8749031	Uninduced	19.500
SRR8749032	Uninduced	25.194

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.087
SRR8400027	Control - Root	22.963