Gene detail information of Glyur002758s00037819.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38180.1 | 3.00E-23 | FAR1-related sequence 5 |
| NR | KEH42590.1 | 1.51E-73 | FAR1 DNA-binding domain protein [Medicago truncatula] |
| Swissprot | tr|Q9SZL8|FRS5_ARATH | 1.00E-24 | Protein FAR1-RELATED SEQUENCE 5 |
| trEMBL | tr|A0A072VWW8|A0A072VWW8_MEDTR | 6.00E-74 | FAR1 DNA-binding domain protein {ECO:0000313|EMBL:KEH42590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02758 | 5349 | 8404 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002758s00037819.1 | PF03101.10 | FAR1 | 101 | 190 | 1.60E-17 |
| Glyur002758s00037819.1 | PF10551.4 | MULE | 282 | 335 | 4.70E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.100 |
| SRR1783600 | control | 0.117 |
| SRR1783602 | moderate drought stress | 0.212 |
| SRR1811619 | moderate drought stress | 0.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.098 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.092 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.014 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.060 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.133 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.063 |
| SRR2868004 | Drought Stress (root) | 0.018 |
| SRR2967015 | Control (root) | 0.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.007 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.031 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.085 |
| SRR8400027 | Control - Root | 0.056 |