Gene detail

Gene detail information of Glyur002753s00038581

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G70610.1	1.00E-86	transporter associated with antigen processing protein 1
NR	KEH22151.1	1.95E-177	ATP-binding ABC transporter [Medicago truncatula]
COG	YP_003951288.1	4.00E-41	efflux ABC transporter permease/ATP-binding protein [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q8RY46\|AB26B_ARATH	1.00E-107	ABC transporter B family member 26, chloroplastic (Precursor)
trEMBL	tr\|A0A072TY73\|A0A072TY73_MEDTR	7.00E-178	ATP-binding ABC transporter {ECO:0000313\|EMBL:KEH22151.1}

Sequence

Transcript Sequence

>Glyur002753s00038581.1
TTGTCCCAATCTATTAATTCTCAACATTTATTTGCAATCATTTTTCTTATTCTGCTGCTGCAGCTTTCAGAAATCACCATGCCGAGTATATTGGCAGCATCAATATTTTCAGCACAGAGTGGTGAGACCATGGCATTCTCTAAGAATGCACAGTTTTTGGTTCTTCTGTGTTTCTCTTCAGGAATATGCAGTGGATTGCGAAGTGGCTGCTTTGGAATTTTGAATGTAACCTTGGATGATGCTCAGGCCAATGTTTTACAGCAGACTCAGTGGAGCTCATCTAGGATGATGCTCAGGCCAATGTTTTACAGCAGACAAAGGAGAATCACCATACTGGAAAGTCATGAAGAGGTGTTGGACAAAGACAAAAATGATCACATTACCATCCCATTCTCCATGCACATTTTTCAGGTAAAGCGTCTACGAGAAAATTTGTATACAGCCATTCTTTTTCAGGACATATCCTATTTTGATAAAGAAAAAGTTGGTGCCTTGACAAGCAGGCTTTCAGCAGATTGTCAACGACTATCCCATGTTATAGGAAATGATTTTCAGCTGGTATTTCGCAACACAGTGCAGGGAACAGGAGCAATAATTAATTTGCTGGCTTTATCTTGGCCATTGGCATTATCTGCACTGATGATTTGTTCTGTGTTGTCTGCAATTTTCCTGGTTTATGGCCGGTATCAAAGAAAAGCAGCAAAGTTAATCCAAGATTTCACAGCTTGTGCCAATGACGTAGCTCATGAAACACTTTCTTTGATAAGAACTGTTCGAGTGTATGGAACTGGAGAAAAAGAATTTGGAAGGTGGTATCAAAGAAAAGCAGCAAAGTTAATCCAAGATTTCACAGCTTGTGCCAATGACGTAGCTCATGAAACACTTTCTTTGATAAGAACTGTTCGAGTGTATGGAACTGGAGAAAAAGAATTTGGAAGGTGGTTTGTTATATTTGCAGTGCTTTTAGGAGGGCTATCAGTTCTCAGTTGTTGTGTAACTGTTGAGCAACTTACTAAGTATGTATTGTACTGTGAGTGGTTGATTTATGCTACTTGGAGGGTGACAAACAGCTTATCATCATTAATGCAGTCCATTGGAGCATCTGAAAAAATCTTCCAACTGATGAATCTTTTGCCGAGTGACCAATTCTTGTCCAAAGGAGTTAAGTTGCAGAGGTTAATAGGGTGCATTCAGTTTGTAAATGTATCGTTTCATTATCCTGCAAGGAGTACGATGCCTGTTCTAGAACACTTAAACTTCTCTGTAGAAGAAAATAAAGTCATTGCCATTGGTGGTCTGAGTGGTAGTGGAAAGAGCACATTAATCAATCTTTTACTTCGTCTCTATGAACCTAGTAGCGGTCAGGAGGTGTTGTACGCGTTAAAAGATGAAGCTAAATCAAGAACCATCATTATCATAGCGCATAGGCTTTCTACTATAAAAGCTGCTGACCGGATTNTTGTTATGGATAATGGTCGCATTATTGAGATGGGAAGCCACAAAGAGCTTCTGCTCAAGGATGGGCTCTATGCGAAGTTAAATAAAATTCAAGTAGATATTTTAACTTGATTGAAGTTGGGTATTTTTTATTTTAAAAGGCAAGGAGGGACATGTGAACCGTGTTGCTATCCATCTATTTATTAACATAAAATATAAATTTTGCTAAATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02753	12808	28727	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002753s00038581.1	PF00664.18	ABC_membrane	139	271	6.60E-20
Glyur002753s00038581.1	PF00005.22	ABC_tran	415	459	3.00E-09
Glyur002753s00038581.2	PF00664.18	ABC_membrane	139	276	3.90E-20
Glyur002753s00038581.2	PF00005.22	ABC_tran	388	433	2.70E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.803
SRR1783600	control	0.789
SRR1783602	moderate drought stress	0.033
SRR1811619	moderate drought stress	0.022

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.135
DRR006520	Root Summer glycyrrhizin high producing strain	4.156
DRR006521	Root Winter glycyrrhizin high producing strain	2.193
DRR006522	Root Winter glycyrrhizin high producing strain	2.203
DRR006523	Root Summer glycyrrhizin low producing strain	6.102
DRR006524	Root Summer glycyrrhizin low producing strain	5.282
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.163
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.872

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.419
SRR2868004	Drought Stress (root)	8.279
SRR2967015	Control (root)	7.705

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.038
SRR9715739	Root	0.000
SRR9715742	Root	0.026
SRR9715743	Root	0.010

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.760
SRR8749028	MeJA induced 9h	12.100
SRR8749029	MeJA induced 9h	10.455
SRR8749030	Uninduced	10.563
SRR8749031	Uninduced	6.723
SRR8749032	Uninduced	5.336

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.428
SRR8400027	Control - Root	0.744