Gene detail information of Glyur002752s00035578 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53850.2 | 8.00E-22 | haloacid dehalogenase-like hydrolase family protein |
| NR | XP_004488728.1 | 9.92E-39 | PREDICTED: probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1-like [Cicer arietinum] |
| COG | YP_003268638.1 | 2.00E-10 | methylthioribulose-1-phosphate dehydratase [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|B9SQI7|MTBC_RICCO | 2.00E-29 | Enolase-phosphatase E1 {ECO:0000255|HAMAP-Rule:MF_03118} |
| trEMBL | tr|I1LV18|I1LV18_SOYBN | 2.00E-37 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G35390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02752 | 34536 | 34760 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K16054 | DEP1 | EC:4.2.1.109 3.1.3.77 | Cysteine and methionine metabolism | map00270 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002752s00035578.1 | PF00596.16 | Aldolase_II | 33 | 74 | 1.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 296.955 |
| SRR1783600 | control | 287.685 |
| SRR1783602 | moderate drought stress | 484.383 |
| SRR1811619 | moderate drought stress | 482.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 178.477 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 194.566 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 66.241 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 73.098 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 151.105 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 172.599 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 118.324 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 123.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 82.632 |
| SRR2868004 | Drought Stress (root) | 78.859 |
| SRR2967015 | Control (root) | 97.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.130 |
| SRR9715740 | Leaf | 48.953 |
| SRR9715741 | Leaf | 69.567 |
| SRR9715739 | Root | 48.132 |
| SRR9715742 | Root | 115.761 |
| SRR9715743 | Root | 99.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 32.346 |
| SRR8749028 | MeJA induced 9h | 63.208 |
| SRR8749029 | MeJA induced 9h | 18.320 |
| SRR8749030 | Uninduced | 14.455 |
| SRR8749031 | Uninduced | 5.345 |
| SRR8749032 | Uninduced | 15.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 146.661 |
| SRR8400027 | Control - Root | 122.554 |