Gene detail

Gene detail information of Glyur002750s00045536

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23160.1	2.00E-46	cysteine-rich RLK (RECEPTOR-like protein kinase) 8
NR	ABD32582.1	3.39E-97	Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic [Medicago truncatula]
Swissprot	tr\|P10978\|POLX_TOBAC	2.00E-44	Endonuclease
trEMBL	tr\|Q2HU05\|Q2HU05_MEDTR	1.00E-97	Integrase, catalytic region; Zinc finger, CCHC-type; Peptidase aspartic, catalytic {ECO:0000313\|EMBL:ABD32582.1}

Sequence

Transcript Sequence

>Glyur002750s00045536.1
CCACCTGAAGATAAGTCCATCATTGGAACCAAATGGGTGTTCAGAAACAAGCTGGACGAAGAAGGTAAAGTTGTGAGAAACAAAGCAAGGTTAGTTGCTCAAGGCTACTCACAACAGGAAGGTATTGATTTTACTGAAACCTTTGCTCCAGTAGCTAGAATAGAAGCCATTCGCATTTTACTTTCATTTGCTGCCCAACATGATATGAGGCTTTATCAAATGGATGTAAAGAGTGCTTTTCTGAATGGTATAATAACAAAAGAAGTCTATGTTGAACAGCCCCCTGGTTTTGAGGATCAATCTTTTCCAAATCATGTTTTTAAATTGAAAAAGGCTCTTTATGGCCTTAAGCAAGCTCCTCGAGCTTGGTATGAAAAACTGAGTTCATTTTTAATGGAAAATGGTTTTTCAAGAGAAAAAGTTGATAACACTCTTTTCAGAAAATCCATAGACTCACATTTCATCATAGTACAGATTTATGTAGATGACATTATTTTTGGTGCTACTGATGAATCTTTGTGTAGAGAATTCTCTGAGTTAATGCAGAAAGAATTCGAAATGAGCATGATGGGAGAGTTGAAGTTCTTTCTTGGACTTCAACAACCCACCCAAACTGTGAAACTACCACTACCAAGCACCACCGCGAGAGGAGATCTGTCGCTTCAACATCAGGTGGCTCGATTTGTGAAGAAGGTTGAATTGAAGGTGCAGCGTGGCAGTGGTACCTATTTCATTCTTGTGGATATGGATACTTGTAGTACTAAAGAAAGTGTCGATGATGCTAATGATGTTCAAATTTTGGAAGCGAGACCCCCACCCCCATCTGTGACTTCTCAACCAAAGGCAAAGAAGCCTAAGACCCTAACATCTGAAGTGTGGATGTATTTAGAAAAGATCGGTCCTGATGAGAATGGAGATGAAAAGTGCAGGTGCAATGGTTGTAGAAAAATATTGGGTTGTAGTTCTAAAAATGGTACTACTCATTTAATGCGGCATGTGAAAAGTTGTGCATGTATTGCTGCTAAATACAAAGATGTGGGTGATATGCTTGTTGATGCTGAGGGAAGGTTGCAAAGTAGACATTTTGACCCTAAGGCTAACCGTGAAATTTTAGCTGAAATGGTTATTGCACACGATGCACCATTTAATATGGTTGAGCGCAAAGATGTAACTTCACTCCCTCCTTCTTTCAGCCTCAAAACCGCCACATCACCATTCCAAGAAGGGGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02750	8765	12707	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002750s00045536.1	PF07727.9	RVT_2	2	206	2.70E-85
Glyur002750s00045536.1	PF02892.10	zf-BED	290	336	4.60E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.709
SRR1783600	control	1.481
SRR1783602	moderate drought stress	2.220
SRR1811619	moderate drought stress	1.862

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.212
DRR006521	Root Winter glycyrrhizin high producing strain	0.384
DRR006522	Root Winter glycyrrhizin high producing strain	0.135
DRR006523	Root Summer glycyrrhizin low producing strain	0.906
DRR006524	Root Summer glycyrrhizin low producing strain	0.768
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.075
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.071

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.338
SRR2868004	Drought Stress (root)	3.558
SRR2967015	Control (root)	2.679

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.266
SRR9715740	Leaf	0.477
SRR9715741	Leaf	0.619
SRR9715739	Root	0.551
SRR9715742	Root	0.156
SRR9715743	Root	0.532

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.303
SRR8749028	MeJA induced 9h	6.180
SRR8749029	MeJA induced 9h	1.415
SRR8749030	Uninduced	2.457
SRR8749031	Uninduced	1.493
SRR8749032	Uninduced	1.218

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.223
SRR8400027	Control - Root	1.588