Gene detail

Gene detail information of Glyur002747s00042594.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08640.2	9.00E-55	flavonol synthase 1
NR	AEF14416.1	1.67E-97	flavonol synthase [Onobrychis viciifolia]
COG	YP_006813087.1	1.00E-07	2OG-Fe(II) oxygenase [Nocardia brasiliensis ATCC 700358]
Swissprot	tr\|Q9ZWQ9\|FLS_CITUN	2.00E-78	Flavonol synthase/flavanone 3-hydroxylase
trEMBL	tr\|K9JZ68\|K9JZ68_ONOVI	6.00E-98	Flavonol synthase {ECO:0000313\|EMBL:AEF14416.1}

Sequence

Transcript Sequence

>Glyur002747s00042594.1
AAAAAAAGGCTAAAAGTACAACAGAGTAGTAATGGAATGAGAGTAACAATTTATACTGTTTGAATTGTAGGATGAAAACAGTTTTTCCAACACATCTATTGACTGTTCATGAATGCATCCACGTCTTGCTTAAGTTGGTAGTAGGTAGAGTGGTAGTAGGTAGAGTGGTTTTCCCATTTATAAATTTCCGAGACACGAGAAATGCGTAAGAAGAGGTTAATAACAAACCCTTTCACACAGGTTAAGTAGAGAAGAAGAAAAAAGTCACACACGAAAAGCACAAAATGGAGGTGCTAAGGGTGCAAAGCGTAGCTCATGAGTCCAAACAGGGTATTATCCCTTCAATGTTTGTTAGGCCAGAGACAGAGCAACCAGGAACCACAACGGTTCATGGGGTGAACCTTGAGGTACCCATAATTGATTTCAGCGACCCAGACAAGGGTAAAGTCCAACGTGAGATTGTGGAGGCAAGTAAAGAGTGGGGAATGTTCCAAATTGTGAACCACGAGATTCCAAGTGAAGTGATAAGCAAATTGCAAAGTGTTGGGAAAGAGTTCTTTGAGTTGCCGCAAGAGGAGAAGGAGGTGTATGCTAAGCCTGCTGGTGCTGAATCTCTAGAAGGTTATGGCACAAAGCTACAGAAGGAGGTGAGTGGGAAGAAAGGATGGGTGGATCATTTGTTCCACATTGTGTGGCCTCCTTCTTCCATTAACTACCGTTTTTGGCCCAACAACCCTCCTTCTTACAGGGAGGTGAACGAGGAATACTGCAGGTACCTGCGTGGGGTGATATTGAGCAACGGGAAATATAAGGCTGTCTTCCACCGAACAACGGTAAACAAAGACAAGACAAGAATGTCGTGGCCAGTGTTCATAGAGCCCCAAGGAGACCATGAAGTTGGTCCTCACCCAAAGTTGATTAACCAAGACAACCCACCAAAATTCAAGACCAAGAAATATAAGGATTATGCTTACTGTAAGCTCAATAAGATCCCTCAGTAATTGAAGCTAGCGGGCACTCCTGCGAAATAATAAGAGACATCATGCAGGTCACACTAGGCATATTTATTTGCTTCTTGTTGGGGTTAACTTTCTCAAATGAGAGTGTAGTTTCTGGAGGAATTATATAAAATATGTATCTAAACTTAGATGTTGTGTATGTGGGTTAAATAAGTAAGGATGAAAGCCAGCCGCTTGTCATATTTTATTATAATTCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02747	11904	19649	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05278	FLS	EC:1.14.11.23	Flavonoid biosynthesis	map00941

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002747s00042594.1	PF14226.1	DIOX_N	42	149	5.30E-28
Glyur002747s00042594.1	PF03171.15	2OG-FeII_Oxy	169	199	7.00E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	97.072
SRR1783600	control	97.270
SRR1783602	moderate drought stress	86.985
SRR1811619	moderate drought stress	87.149

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.082
DRR006520	Root Summer glycyrrhizin high producing strain	5.646
DRR006521	Root Winter glycyrrhizin high producing strain	13.207
DRR006522	Root Winter glycyrrhizin high producing strain	12.185
DRR006523	Root Summer glycyrrhizin low producing strain	3.252
DRR006524	Root Summer glycyrrhizin low producing strain	3.261
DRR006525	Leaf Summer glycyrrhizin high producing strain	249.017
DRR006526	Leaf Summer glycyrrhizin high producing strain	248.967

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	157.766
SRR2868004	Drought Stress (root)	111.402
SRR2967015	Control (root)	96.521

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	63.130
SRR9715740	Leaf	85.899
SRR9715741	Leaf	42.285
SRR9715739	Root	39.132
SRR9715742	Root	47.966
SRR9715743	Root	45.821

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.522
SRR8749028	MeJA induced 9h	45.007
SRR8749029	MeJA induced 9h	40.866
SRR8749030	Uninduced	34.942
SRR8749031	Uninduced	36.143
SRR8749032	Uninduced	14.897

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	176.105
SRR8400027	Control - Root	141.075