Gene detail information of Glyur002745s00040065 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16890.1 | 2.00E-21 | disease resistance protein (TIR-NBS-LRR class), putative |
| NR | KHN38342.1 | 0 | TMV resistance protein N [Glycine soja] |
| COG | YP_007098491.1 | 5.00E-07 | Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus PCC 6605] |
| Swissprot | tr|O23530|SNC1_ARATH | 1.00E-24 | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 |
| trEMBL | tr|K7KBB2|K7KBB2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G45353.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02745 | 4077 | 18643 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002745s00040065.1 | PF00560.28 | LRR_1 | 1302 | 1323 | 0.85 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.203 |
| SRR1783600 | control | 6.091 |
| SRR1783602 | moderate drought stress | 4.693 |
| SRR1811619 | moderate drought stress | 4.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.442 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.455 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.814 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.752 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.096 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.865 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.103 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.462 |
| SRR2868004 | Drought Stress (root) | 7.164 |
| SRR2967015 | Control (root) | 4.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.828 |
| SRR9715740 | Leaf | 3.796 |
| SRR9715741 | Leaf | 6.441 |
| SRR9715739 | Root | 0.996 |
| SRR9715742 | Root | 4.058 |
| SRR9715743 | Root | 3.556 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.559 |
| SRR8749028 | MeJA induced 9h | 4.031 |
| SRR8749029 | MeJA induced 9h | 5.753 |
| SRR8749030 | Uninduced | 6.028 |
| SRR8749031 | Uninduced | 2.539 |
| SRR8749032 | Uninduced | 4.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.756 |
| SRR8400027 | Control - Root | 15.982 |