Gene detail information of Glyur002739s00040322 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11130.1 | 1.00E-29 | Clathrin, heavy chain |
| NR | XP_004500501.1 | 5.68E-33 | PREDICTED: clathrin heavy chain 1-like [Cicer arietinum] |
| Swissprot | tr|Q0WLB5|CLAH2_ARATH | 1.00E-32 | Clathrin heavy chain 2 |
| trEMBL | tr|G7JBT5|G7JBT5_MEDTR | 2.00E-33 | Clathrin heavy chain {ECO:0000256|PIRNR:PIRNR002290} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02739 | 9697 | 13137 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.997 |
| SRR1783600 | control | 1.814 |
| SRR1783602 | moderate drought stress | 1.528 |
| SRR1811619 | moderate drought stress | 1.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.608 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.497 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.707 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.079 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.751 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.262 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.411 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.650 |
| SRR2868004 | Drought Stress (root) | 2.266 |
| SRR2967015 | Control (root) | 2.520 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.244 |
| SRR9715740 | Leaf | 0.134 |
| SRR9715741 | Leaf | 0.218 |
| SRR9715739 | Root | 0.180 |
| SRR9715742 | Root | 0.594 |
| SRR9715743 | Root | 0.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.180 |
| SRR8749028 | MeJA induced 9h | 5.177 |
| SRR8749029 | MeJA induced 9h | 0.686 |
| SRR8749030 | Uninduced | 0.224 |
| SRR8749031 | Uninduced | 0.405 |
| SRR8749032 | Uninduced | 0.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.810 |
| SRR8400027 | Control - Root | 1.946 |