Gene detail

Gene detail information of Glyur002726s00036973

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23870.1	0	trehalose-phosphatase/synthase 9
NR	XP_004509840.1	0	PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9-like [Cicer arietinum]
COG	YP_004625437.1	9.00E-132	alpha,alpha-trehalose-phosphate synthase [Thermodesulfatator indicus DSM 15286]
Swissprot	tr\|Q9LRA7\|TPS9_ARATH	0	Probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 9
trEMBL	tr\|I1N1F3\|I1N1F3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G18590.1}

Sequence

Transcript Sequence

>Glyur002726s00036973.1
TGCCGTTCTCGTTTGTTCTTTCTTTCATTCATTTTCATTCTCCTAAACGGAAAACCTCTCTCTCTCTATAACGCAGTCTCCAACGCTATCTCTCATCACTTCGCCGGAATCTCGCCGTTTTCGTCGCCGGAAAGGTGAGACTCAGAGCTCGTGACTCGTGAGTTGTGTGTGACTACTGAAGAAAAAAAGATATTGAAGAAAGGTCCCTGGACTAGTCATGTCATCAAGATCATATGCGAACCTCTTAGACTTAGCTGGTGGAGGCTTGCTTGATATTCCTCACACCCCAAGAACTCTACCAAGGGTTATGACTGTTCCTGGAGTTATTTCTGACCTGGATGGTTATGGTTGTAATGATGGGGATTCAGATGTTAGCTCTTCTGGATGTCGGGAGCGGAAAATCATTGTAGCAAATATGCTGCCGTTGCAGGCTAAAAGAGATATAGAAACTGCTAAATGGTGCTTCAGTTGGGATGAGGATTCAATTTTATTACAATTAAAAGATGGTTTTTCTTCTGATACTGAGGTAATATATGTGGGTTCCCTCAAGTTTGAAATAGATGCCAGTGAGCAGGAAGAAGTTGCTCAGAGATTACTGGACGACTTCAATTGTGTGCCCACCTTTCTACCCCATGATCTGCAGAGAAAGTTCTATCTTGGCTTTTGTAAGCAGCAGCTTTGGCCTCTCTTTCATTATATGCTACCCATATGCCCAGATCATGGTGATCGCTTTGACCGCTTGCTTTGGCAGGCTTATGTTTCTGCAAACAAAATATTTGCAGACAAGGTTATGGAAGTGATTAATCCTGATGATGATTTTGTTTGGGTTCATGACTATCACTTGATGGTTTTGCCTACTTTCTTGAGGAAAAGATATAATCGAGTTAAGCTTGGGTTCTTTCTTCATAGTCCTTTCCCGTCATCTGAAATTTATCGAACTTTGCCAGTAAGGGATGAAATCTTGAGGGCATTGTTGAATTCTGATTTAATTGGTTTTCATACATTTGATTATGCCCGCCACTTTCTTTCTTGCTGCAGTAGAATGCTAGGTCTGGACTATGAATCTAAACGAGGACATATAGGACTTGATTACTTTGGCCGCACTATATTTATTAAAATTTTGCCAGTAGGCATTCACATGGGTAGGCTTGAATCTGTATTAAATCTTCCTTCTACATCTGCTAAACTAAAAGAGATTCAGGAAGAATTTAAGGGTAGAAAGGTGATTCTTGGTATTGATGACATGGATATTTTTAAGGGCATCAGTCTGAAACTTCTAGCTGTGGAGCAACTGCTGCACCAGAATCCAGATTTGCAGGGCAAAATTGTCCTAGTTCAAATTGTTAATCCTGCAAGGGGTTCAGGGAAGGATGTTCAGGAAGCAAAGAGGGAAACTTATTTAATTGCCCAGAGGATCAATGATACTTACGGTTCAAATCATTATCAGCCAGTCATTCTGATTGACCGCCCTGTTCCTCGTTTTGAGAAGAGTGCCTATTATGCTGTAGCCGAATGTTGCATTGTCAATGCTGTAAGGGATGGGATGAACTTAGTCCCATACAAGTATATTGTCTGCAGACAGGGAACTGCAAAGCTAGATGAAGCATTGGGTAAAAAAGGTGATTCTCCTCGCACAAGCATGCTTGTTGTGTCTGAGTTCATTGGTTGTTCACCTTCTCTGAGTGGGGCCATCAGGGTCAATCCCTGGGATGTAGATGCAGTTGCTGATGCTCTGAATCTGGCCATTTCTATGAATGATTCAGAGAAGCAGTTGCGCCATGAGAAACACTATCGGTATGTCAGTTCTCATGATGTAGCATATTGGGCACGCAGTTTTATGCAGGATTTGGAGAGAGCCTGCAAAGACCATTACACCAAAAGGTGTTGGGGAATTGGTTTGGGCCTTGGGTTTAGAGTTGTTTCTCTTTCTGATGGTTTTAGGAAGTTGTCCATTGACCATATTGTTTCAGCATACAAAAGAACCAGTAGACGGGCCATCTTTCTCGATTATGATGGCACTGTTGTACCACAGTCTTCTATAAATAAAATCCCCAGCCCTGAAGTCATATCTGTGCTAAATGCTCTGTGTAATGATCCCAAGAATGTTGTGTTCATTGTTAGTGGGAGGGGAAGAGATTCTCTGAGTGATTGGTTTACTTCCTGCAAAATGCTAGGACTTGCAGCTGAACATGGGTACTTCTTAAGGTGGAATAGAGATTCCGAATGGGAAACCAGTCACTTGTCTGTGGACCTTGATTGGAAAAAGATAGTGGAGCCTGTCATGCAGTCGTATACAGAAGCAACTGATGGATCTAATATTGAAATTAAGGAAAGTGCTTTGGTGTGGCATCATCAAGATGCAGACCCTGATTTTGGTTCTTGCCAAGCCAAAGAACTGTTGGATCACTTGGAAAGTGTTCTTGCCAATGAACCAGCAATTGTTAAGAGAGGCCAGCATATTGTTGAAGTTAAGCCACAGGGAGTAAGCAAAGGTTTGGTAGCTGAAAAGGTTCTTTTGAATATGGTTAATGGCGGTAATCCACCAGATTTCGTAATGTGCGTCGGAGATGATAGGTCCGATGAAGACATGTTTGAGAGCATTTTGAGGACAGTCTCATGCCCATCATTACCATCAGCTCCAGAGATTTTTGCCTGCACTGTAGGTAGGAAACCTAGCAAGGCCAAATATTTTCTTGATGATACTGCTGATGTTGTAAAGATGCTTCAAGGCCTTGCTGCCTCATCAAATCCAAAGCCCAGGCATCTTGCCCAATTCCAGGTTTCTTTTGAGAGCAGTGTTTGTTAGACAGGGCAAGACATCATCATTATTGGTTCATTATGCTGCTTTGCTTGAGAGGATTCTTATCCTGTGAATCAGAGCAAATTTTGGGTATTAATCTTAACCTGAGGAATAGCGCGACCTTGCTGTTGCTGATTTGATTCTTTTTGGGCTCCTGAACCGGTTTGCATGGCATTTAGAACGTAGAATGATTTTGTTAGATAGTGCGGTTCATGGATGGTCTGACAAATTACTCTCTTGTACATGGTAACATCAATTGTTATATTTACTGGTGCCACCTTTGGGCTTTGGTTGTGCTTATAATTGTTNGACCACATCGTCGTTTGTACTGAAAAATGGGGCACCAAAACTTCAAACATGTATAGTCACAGTACTCTGTTACAATACATAATGCTATTCTGGTTTGAGATTTCCTCTTCAACTCAGTGGTAGTCTATGATCAGAAAAAGTTATTTATGGGCATTTTTACGGATTTAGGGGTGAGAAGGCCTTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02726	21428	26542	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT20

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K16055	TPS	EC:2.4.1.15 3.1.3.12	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0005992 trehalose biosynthetic process

GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002726s00036973.1	PF00982.16	Glyco_transf_20	60	546	1.10E-185
Glyur002726s00036973.1	PF02358.11	Trehalose_PPase	595	829	5.60E-82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.922
SRR1783600	control	7.781
SRR1783602	moderate drought stress	12.658
SRR1811619	moderate drought stress	12.435

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.439
DRR006520	Root Summer glycyrrhizin high producing strain	9.543
DRR006521	Root Winter glycyrrhizin high producing strain	5.121
DRR006522	Root Winter glycyrrhizin high producing strain	5.062
DRR006523	Root Summer glycyrrhizin low producing strain	14.962
DRR006524	Root Summer glycyrrhizin low producing strain	14.834
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.853
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.853

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.049
SRR2868004	Drought Stress (root)	54.548
SRR2967015	Control (root)	61.522

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.491
SRR9715740	Leaf	46.902
SRR9715741	Leaf	79.415
SRR9715739	Root	14.331
SRR9715742	Root	29.269
SRR9715743	Root	23.313

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.947
SRR8749028	MeJA induced 9h	55.867
SRR8749029	MeJA induced 9h	28.594
SRR8749030	Uninduced	32.455
SRR8749031	Uninduced	48.318
SRR8749032	Uninduced	27.889

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.210
SRR8400027	Control - Root	15.692