Gene detail

Gene detail information of Glyur002726s00036970

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G70280.2	4.00E-146	NHL domain-containing protein
NR	KHN24136.1	0	hypothetical protein glysoja_046686 [Glycine soja]
COG	YP_007225717.1	7.00E-16	NHL repeat protein [Echinicola vietnamensis DSM 17526]
trEMBL	tr\|I1N1F2\|I1N1F2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G18550.1}

Sequence

Transcript Sequence

>Glyur002726s00036970.1
ATGGGTAAGCACATTTTGTTACTGGGTCTCACTCTTCAGCTTCTGTATGGCACACTCTCAGCTGCACCATCCACTACTTCCCCTGCAAAAATCGTTAGTGGGTTTCTCTCCAATGCTGTGCCTGCTTTCACCAAATTGGTCTGGTCCCTCAAAGCCACCACCAAAACGGCTGTTTCGAGCAAGTCGATGATGAAGTTTGAGAGTGGGTACAGTGTGGAGACTGTGTTTGATGGAAGCAAGCTTGGAATTGAGCCTTATGCTGTTGAGGTGTTGCCAAATGGAGAGCTTCTCATTCTGGATTCAGCTAATAGTAACCTCTATAGAATCTCCTCCTCACTCTCTCTGTATAGCAGACCAAAGATGGTGGCTGGATCAGCTGAAGGATATTCTGGACATGTCGATGGGAAGCTCAGGGAAGCTAGGATGAACCACCCAAAGGGGATAACTGTTGATGACCGAGGAAATATTTATGTTGCAGATACTACAAATATGGCAATTAGGAAAATTAGTGATTCAGGGGTCACAACCATTGCTGGAGGAAAATGGAGTCATGGAGGGGGCCATGTCGATGGACCAAGTGAAGAAGCTAAATTTTCTGATGACTTTGACGTGGTTTATGTTGGAAGTAGCTGTTCCTTACTCATTATAGACAGAGGAAACCGAGCTATTAGGGAGATCCAACTCCACTTTGATGATTGTGCCTATCAATATGGCAGTGGATTCCCACTTGGGATTGCAATGCTTGTTGGGGCTGGTTTCTTTGGTTATATGCTGGCATTGCTGCAGCGTAGGCTTGGTACTATTGTAGCATCNCAGGATGCCCAGGTTCCAGTAACAGTGATGTCTTCTGTTTCTCCAAGTCCATATCAAAAGCCCNTGAAATCTGTCAGGCCTCCTTTAATTCCATCAGAATATGAACCTGATAAGCAGGAAGAAGGTTTCTTTGGATCTCTTGGGAAGCTTCTTGCCAATGCCGGTGCGTCAATGGTGGAGATAATGGGAGGACTATTTCCTGCTTTCAGAAGAAGACCGCAGAGCTACCAGTTTCAAAGGCAACAGGTGCTCCAACAACCTCAGAAGCAAGTGAATGATTGGCCTGCACAGGAAAGTTTTGTGATTCCCCACGAAGATGAGCCACCTTGTATTGACACAAGGGCGCCGACACCNAGAAAAATGTATCCTTTCATGTCCAAGGATGCAGAAAAAATGCAACAATTGAGGCAAAGTAGAGCATTCTATAGTGGGTGGGATGGAGATCAGCAGCAACAGCAGCAGCAGCAGCAACTGCAACAACAACAACAAAAACATCATCATCATCATCATCGGCATCAGTACCATTCATCAACCCCTCACACTTACTATGAGCAGAGCAATGAGACAACCAGTGAGATAGTTTTTGGGGCAGTGCAGGAACAGGAGGGGAAGCAGGAGTCTGTGGTTATCAAGCCTGTTGATTATGGGGGCTCACCATATGAACATCACAATATTCGGTCTCGAATGAGTTCCATGGGTTATTATACCCNCAAGTATTGAGTGTATACAGTTAGGAAGTTTAGAACTAATGAAAAATCAATCAAGCTTTGATTTGGAGAGAGGAGGATGGAATCAAGTGTAGGTAGCATAATGATTTCTTTTAGTGGGATCTTTAGTAAGGAGAAGTNGGTTATCATAATATGAATTGTTATTCAATTTTGCCAAATGTAGATTGCTCTTAGTGTGTAGTCTAAATAGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02726	4285	7505	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002726s00036970.1	PF01436.16	NHL	143	168	8.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.816
SRR1783600	control	17.058
SRR1783602	moderate drought stress	14.397
SRR1811619	moderate drought stress	13.843

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.347
DRR006520	Root Summer glycyrrhizin high producing strain	15.446
DRR006521	Root Winter glycyrrhizin high producing strain	0.383
DRR006522	Root Winter glycyrrhizin high producing strain	0.374
DRR006523	Root Summer glycyrrhizin low producing strain	6.433
DRR006524	Root Summer glycyrrhizin low producing strain	6.772
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.226
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.194

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.883
SRR2868004	Drought Stress (root)	5.963
SRR2967015	Control (root)	6.699

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.938
SRR9715740	Leaf	0.485
SRR9715741	Leaf	0.645
SRR9715739	Root	5.127
SRR9715742	Root	7.917
SRR9715743	Root	6.782

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.719
SRR8749028	MeJA induced 9h	2.596
SRR8749029	MeJA induced 9h	1.759
SRR8749030	Uninduced	1.240
SRR8749031	Uninduced	0.182
SRR8749032	Uninduced	0.804

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.207
SRR8400027	Control - Root	20.112