Gene detail

Gene detail information of Glyur002726s00036969

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23890.1	5.00E-35	NHL domain-containing protein
NR	XP_004509842.1	3.62E-68	PREDICTED: uncharacterized protein LOC101495603 [Cicer arietinum]
COG	YP_003091636.1	2.00E-12	NHL repeat containing protein [Pedobacter heparinus DSM 2366]
trEMBL	tr\|A0A072TRZ8\|A0A072TRZ8_MEDTR	2.00E-67	Plant/T23E23-13 protein, putative {ECO:0000313\|EMBL:KEH19951.1}

Sequence

Transcript Sequence

>Glyur002726s00036969.1
GGGGGGGGTTCTGTTGCAGAAAGCGCTTTAAAGAGGTTTTCTGGAAATGGGTCTCCGGGGTATGAAGACGGTGATGTGGGTTCAGCTCAGTTTAACAAGCCCAGAAGCTTTGCCATTGATCTCAGAGGGAATGTGTATGTTGCTGACAGGGTCAACCAGGTCATAAGGAAAATCAGCGCCAATGGTGTCACCACAATTGCTGGAGGGTCCTCAGAAAGAGAAAAGTCAAGCAGAAACGATCAACCAGCACAAAATGCATCATTTTCAAGTGATTTTGAGCTGACTTTCATTCCTGGCATGTGTGCTTTACTGGTGTCAGATCGTATGCATCAATTGGTCCATCAGATTAATTTGAAGGAGGAGGATTGTACTGTTGGATCCAAGTCTGGATTCATGAACATAGCAAAGCAAGCAGTTCAACTCAAGGGTGGCTTGGTGCAGTTATGACTTGGACACTAGGATTAGGACTTTCTTGTTTACTGGGCTTAGTATTTGGGATTGTGGTCCGCCCTTATATCATCCCTCATACAGGGAGGCTCCAGCCCTTGCCATTTCATCATGACATGGAAGCATTGCCTAACCAGTCTGGGGAAGCTAGTACTGACACTCTACTCCGGCACCAAAAGCNCAGTTGCTAGCTGCACTTACTCCTCCGCTTTTGCAATCCCGGAGAGACTTTGGAGATTGAGTCTCTCTCTTCTTCTCCTCATGTTTAGAACCAACATGGTTTCCCCAAGGCCGCATCTGGAGTCTGTGTCTTTGCTAGATTTGGATGCCTACAATAGTGGTGAGGTAACAAAGTCAAGCAAGTATTTTGATCAACTTAAGGATTTGATGAGTTTTGAGGAAGACCTTCTTCTGGATTCAACCAAGAAAACCTTATACCAAGGAAAGGGTGCCAGAGGCCGCAGAGGAGCTGGTGTCATCATGCAGCAGCCTAACATTGGCTTTGTAGAGGCACCTAAAGATAATAATAACATTGTGAAGCGGAGATGAAGTTATTTGTATGACAGTACTGTGTTCTGTGAATTAGTGTGCAAATATTGTCATCTTAGTGTTTTTCTTTTGATCTAACTGCGACCTTGTAAACTATCTATTTATTACTATTATGAAAGTCACTTTAGATTCAAATTTTTCTATTTTCTGCCTAGTGCGCTCTTTCTGCCCATTCACTCCACTCTTTCTTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02726	68	3716	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.929
SRR1783600	control	34.013
SRR1783602	moderate drought stress	41.223
SRR1811619	moderate drought stress	41.544

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.919
DRR006520	Root Summer glycyrrhizin high producing strain	62.137
DRR006521	Root Winter glycyrrhizin high producing strain	110.957
DRR006522	Root Winter glycyrrhizin high producing strain	108.666
DRR006523	Root Summer glycyrrhizin low producing strain	46.087
DRR006524	Root Summer glycyrrhizin low producing strain	45.408
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.367
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.093

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.452
SRR2868004	Drought Stress (root)	35.537
SRR2967015	Control (root)	45.242

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.793
SRR9715740	Leaf	21.542
SRR9715741	Leaf	19.885
SRR9715739	Root	46.780
SRR9715742	Root	40.228
SRR9715743	Root	37.150

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	37.169
SRR8749028	MeJA induced 9h	37.285
SRR8749029	MeJA induced 9h	27.339
SRR8749030	Uninduced	22.937
SRR8749031	Uninduced	8.369
SRR8749032	Uninduced	17.533

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	70.797
SRR8400027	Control - Root	60.850