Gene detail information of Glyur002720s00042682 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G17210.1 | 9.00E-33 | heat stable protein 1 |
| NR | NP_001235728.1 | 1.34E-47 | uncharacterized protein LOC100305974 [Glycine max] |
| COG | YP_003372990.1 | 4.00E-16 | stress responsive alpha-beta barrel domain-containing protein [Pirellula staleyi DSM 6068] |
| Swissprot | tr|Q9LUV2|POP3_ARATH | 5.00E-41 | Probable protein Pop3 |
| trEMBL | tr|C6SXE9|C6SXE9_SOYBN | 5.00E-48 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU13922.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02720 | 10238 | 12272 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002720s00042682.1 | PF07876.7 | Dabb | 16 | 111 | 4.40E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.158 |
| SRR1783600 | control | 1.940 |
| SRR1783602 | moderate drought stress | 3.496 |
| SRR1811619 | moderate drought stress | 3.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.473 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.896 |
| SRR2868004 | Drought Stress (root) | 0.215 |
| SRR2967015 | Control (root) | 0.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 64.158 |
| SRR9715740 | Leaf | 0.161 |
| SRR9715741 | Leaf | 19.669 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.584 |
| SRR9715743 | Root | 1.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.484 |
| SRR8400027 | Control - Root | 3.257 |