Gene detail

Gene detail information of Glyur002719s00034969

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G27320.1	0	histidine kinase 3
NR	XP_003524900.1	0	PREDICTED: histidine kinase 3-like isoform X1 [Glycine max]
COG	YP_008089003.1	9.00E-87	PAS domain S-box [Chthonomonas calidirosea T49]
Swissprot	tr\|Q9C5U1\|AHK3_ARATH	0	Histidine kinase 3
trEMBL	tr\|I1K3M7\|I1K3M7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G28070.1}

Sequence

Transcript Sequence

>Glyur002719s00034969.1
GTAGTGCTGTACAGCTTATAAAATAAAAATCTCTACTGGGGTGTGGGGGAGTGAAAACCTTGAACACTCACGTGCTTTTGTTGTTCTTTGTTTGGTATTAGGACACTGCAGTGCAACTGCAAGCTAGAGTTTTCTCTTCGTTTTGAGGGATGATAAAAATCGAATCTTTTTGTAGGTTTAAGTTTTGGCCCCTCCTTTTTTGTTCTCCCTCGTCCTGGTTGGTAGCTGCTAGCTGACAAGATAATGAGAAGTATCAATTTCTGTTTTAGAATTAGAAACCCAGAATCTCGTGTGATTCTTTTATTCTTTTAAAAGGGTATGTGAATTTCTTCTCACCTGCCTTAAATTTCAGTGCTTATTTGCATTTCTGAATTTTAAGCTATTGTGGTGGATAAGACAGCATCTTATCAAGGTCACATCCCTATTATCATTATTATCATTTCTTTATTTCCCTTTAAACTGCTAAGTTTTAGGAATTGGGGAGGTGCTTGTGTAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGTCTTGAATTTCCTTCTAAGCCTTGTGGTGTAGAGATTCTGTGGATTTGACAGTGGTTGGTTCTACTGGACTTGGAACTGTTTCTACTTAACTTGTGTTGGTTACTGTTGTGGATGAGTTTGCTCCATGTAGTTGGGTTTGGTCTAAAAGTGGGGCATCTACTTTTGGTGCTATGTTGCTGGGTTGTGTCTGTCGTTTACCTCAATAACTGGTTCATTAACAGTGGAATTATGGATTCCAAGACGTGTGGTGGTTTTCTGGGTGGTGATGGTAGTGGCAGCAGCAAGGTGTGGCTCAAATGCTTGGAGAAGATCTCAGGGCAGGGTTACAAAATCCATCAACAGTACTATCAGTATATTGGGTCCAAGAAAGTGAAGAGAGCTTTGTGGAGGAAGCTCTTATTGACATGGGTAGTGGGTTGGACCTTGGTATCTTTGTGGATCTTCTGCTACATGAGCTTACAAGCTACTGAGAAGAGGAAAGAAACACTTGCAAGCATGTGTGATGAAAGGGCTAGGATGTTGCAGGATCAGTTTAATGTAAGTATGAACCATATCCAAGCTATGTCCATTCTGATCTCAACCTTCCACCATGCCAAGAACCCCTCAGCCATAGATCAGGACTTGCAGAGAACTTTTGCCAGGTATACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCATATGCTGTAAGAGTGCTCCATTCTGAAAGGGAACAATTTGAGAAGCAACAAGGATGGACTATTAAGAGGATGGATACTCTGGAGCAGAACCCAGTTCATAAGGACGATTATGCCCCGGAGGCTTTGGAGCCATCCCCCATCCAGGAAGAATATGCTCCTGTCATTTTTGCACAGGATACAATTTCACATGTGATTTCTGTTGACNTGCTTTCTGGAAAGGAAGACCGTGATAATGTGCTGCGTGCAAGAGAATCANGCAAAGGGGTTTTAACTGCACCCTTCAGGCTGCTCAAATCAAATCGTCTAGGAGTTATCCTGACATTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAACTGATGGGTATCTTGGCGGGGTATTTGATATTGAGTCATTAGTGGAGAAATTACTTCAGCAACTTGCTAGCAAGCAAAGTGTAATTGTTAATGTGTATGACACTACAAATCATACTCAGCCAATTGCCATGTACGGCTCAAATGTATCAGGGGATGTGTTCTATCATGTCAGCACTCTCAACTTTGGAGACCCTTTCAGGAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCACCATGGCCATGGTTGGCAATAACTACTTCAATTGGCATTCTTGTTATTGCTCTCCTTGTGGGACATATTTTCCATGCCACCGTGAATCGGATTGCCAAAGTAGAAGATGATTACCGTGAGATGATGGAGCTTAAAAAACGTGCNGAGGCAGCCGATGTTGCAAAATCCCAGTTTCTTGCAACTGTTTCCCATGAAATCAGAACACCAATGAATGGTGTTTTAGGGATGNTGCATATGCTTATGGACACAGATTTAGATGTAACCCAACAGGAATATGTCAGAACAGCACAGGAAAGTGGAAAAGCTCTGGTGTCACTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATTTGGTAAGCTGGAGCTTGAGGCAGTTCTCTTTGACATACGGGCAATTTTGGATGATGTATTGTCACTATTTTCTGAGAAGTCCCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTGTCAGATCAGGTTCCTGAACTGCTAATAGGTGATCCAGGAAGGTTTCGGCAAATAATTACCAATCTCATGGGTAACTCAATTAAGTTCACAGACAAAGGACACATTTTTGTCACTATCCATCTTGTTGAGGAGGTTGTCCATTCTATAGAGGTTGACAACGAATCAGACTCAGAAAACACCTTGAGTGGTTTCCCCGTTGCTAATAGTCGCCTGAGTTGGAAAGGATTCAAGGCTTTCAGTCAAGAGGGACCTCTTGGTTCTTTCTCTTCCTCCTCCAGTGATCTCATCAATTTGATTGTGTCTGTTGAAGATACAGGTGAAGGCATTCCTCGAGAATCGCAACCCCTCATCTTCACTCCATTCATGCAAGTAGGTCCATCCATTTCCCGGAAGCACGGGGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGTGAAATCGGATTTGTAAGCGAACCCAAGACTGGATCCACTTTCACTTTTACTGCTGTCTTCACCAATGGACACCCCAATTCAAATGAGTCCAAAATTCAGCAAATCAACAACCAACCTCAACCTGCATCCTCAGAATTTGAGGGAATGACTGCATTGGTTATTGACCNGAGACCGGTTAGAGCAGAAGTGTCTAGATATCACTTCCAACGGCTTGGCATTCATGTTGAAATGGTTTCGGATTTAAACCAAGGTTTGTCAACCATAAGCAATGGGAATGCAGTTATCAACATGGTCCTGATTGAGCAGGAGGTCTGGGATAGAGATTCAGACATGTCATCTCGCTTTGTCAATAACACAAGGAAAGTTGATCGCGGGGTTCCTCCAAAGCTGTTCATTCTTGTNAATTCTAGTAGCTCTTGTAAAGCAAGTAGTGTAACCCCGGGTGTTCATTGTCCTANCATCATCACAAAACCTCTGAGAGCAAGCATGCTTTCTGCCTCATTAAAACGAGCCATGGGTGTTAGGAACAATAGAACTCCTTCAAATAGGGACCTCCAAAGTTTGTCTCTTCGCCATCTTCTTCGTGGTAGGAGAATCCTAATTGTTGATGACAATAGTGTGAACCGTGCAGTAGCAGCTGGCGCTTTGAAAAAGTATGGAGCAGATGTGGTTTGTGTTAGCAGTGGAAAAGATGCCATCTCTTCACTGAAGCCACCCCATCGGTTCGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACAAAGAGAATTAGAGATATGGAACATGATATGAAAAGGGAAGTGTCTATGGATGGCTTNGAGAATAATTCAAACTGGCATGTGCCCATTTTAGCCATGACTGCAGACGTGATTCAGGCTACACACGAGGAATGCCTAAGGTGTGGCATGGATGGATATGTTTCGAAACCATTTGAAGCCGAACAGCTTTATAGAGAAGTTTCTCGGTTTTTCCAGTCATCTTGAAAAAAGAAGACAGAANGCTGATCGAAACCAGAGGATTGTTGATAATGGAAGCATAATTTTTTTCTGCTCCAGGAACACACTGAAATGGATAAAAACATGTTCAGAAGTCTCCTGACAGTAAGCTCTTCCTATTTAACAGCCAGTGCATGTTTTGATATTTCTCCACTTGAGAAAGTTTNATGGTTATTCTATAAGAGACTGAAGAATGTTACCTATCTCATTAAAAAATGATGGAAGAAAGAGGGGGATGTGGAAATGCAGAAATGGCTCATTATACCATTTTGACCCATTTCATTTTCTTGGTGCTGTTTGTGAAGATCCCTGGTTTATTGTTTTTGTGGCAGGGGGTGTACATAAGACCCAAGTTTGATTGGTTGCAATTGAGTTGTAATTGGTTGTTAAAGGGGTATCAAAACCCATTGATTCTTCCATGTAAAGTGAGTCTCTCATCTGATTGAGGGGGATTTAAAGACAAAGGGGGGTCTCTCATCCATGTGTATGTAATAATAGTAATACATCTTACAGTTGTCTAGGCTAGTCATGTAACATTTTTCTGGGTACTAATTAGGTTGATTCAGGTGAATGAAAGGAAATTTAGCTTCTTGGCAACAAAAAGGGAAGGAAGTGCACCACCATCAGCCTTGTATATGACACTTACAATAATAAAGGTGGTGATTGATGAGTACCTACGACAGCTTCACTTATGTTTGTTAATGGTGCCGGAATTCGGCTTTCAAATGTTGTAACTGATACATTAATTATACTATAGTGCTGCTCGAGTGATCCACCATTTTTTTGGCCGGTTTATAAATTTCCTGTTCTGGATTACCTTTGACTCGTTGCTNTGC

Protein Sequence

>Glyur002719s00034969.1
MSLLHVVGFGLKVGHLLLVLCCWVVSVVYLNNWFINSGIMDSKTCGGFLGGDGSGSSKVWLKCLEKISGQGYKIHQQYYQYIGSKKVKRALWRKLLLTWVVGWTLVSLWIFCYMSLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQDLQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPIQEEYAPVIFAQDTISHVISVDXLSGKEDRDNVLRARESXKGVLTAPFRLLKSNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASKQSVIVNVYDTTNHTQPIAMYGSNVSGDVFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGHIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMXHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDQVPELLIGDPGRFRQIITNLMGNSIKFTDKGHIFVTIHLVEEVVHSIEVDNESDSENTLSGFPVANSRLSWKGFKAFSQEGPLGSFSSSSSDLINLIVSVEDTGEGIPRESQPLIFTPFMQVGPSISRKHGGTGIGLSISKCLVGLMNGEIGFVSEPKTGSTFTFTAVFTNGHPNSNESKIQQINNQPQPASSEFEGMTALVIDXRPVRAEVSRYHFQRLGIHVEMVSDLNQGLSTISNGNAVINMVLIEQEVWDRDSDMSSRFVNNTRKVDRGVPPKLFILVNSSSSCKASSVTPGVHCPXIITKPLRASMLSASLKRAMGVRNNRTPSNRDLQSLSLRHLLRGRRILIVDDNSVNRAVAAGALKKYGADVVCVSSGKDAISSLKPPHRFDACFMDIQMPEMDGFEATKRIRDMEHDMKREVSMDGXENNSNWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLYREVSRFFQSS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02719	26780	33385	-

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14489	AHK2_3_4	EC:2.7.13.3	Plant hormone signal transduction	map04075

Gene Ontology

biological_process

GO:0000160 phosphorelay signal transduction system

GO:0007165 signal transduction

GO:0016310 phosphorylation

cellular_component
GO:0016020 membrane

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004871 signal transducer activity

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002719s00034969.1	PF03924.8	CHASE	171	367	2.80E-41
Glyur002719s00034969.1	PF00512.20	HisKA	453	516	8.10E-18
Glyur002719s00034969.1	PF02518.21	HATPase_c	565	725	4.20E-30
Glyur002719s00034969.1	PF00072.19	Response_reg	905	1032	2.90E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.501
SRR1783600	control	11.593
SRR1783602	moderate drought stress	15.983
SRR1811619	moderate drought stress	16.094

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.409
DRR006520	Root Summer glycyrrhizin high producing strain	16.087
DRR006521	Root Winter glycyrrhizin high producing strain	19.380
DRR006522	Root Winter glycyrrhizin high producing strain	18.786
DRR006523	Root Summer glycyrrhizin low producing strain	24.255
DRR006524	Root Summer glycyrrhizin low producing strain	24.097
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.612
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.492

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.929
SRR2868004	Drought Stress (root)	61.672
SRR2967015	Control (root)	71.733

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.236
SRR9715740	Leaf	28.788
SRR9715741	Leaf	25.142
SRR9715739	Root	5.820
SRR9715742	Root	29.153
SRR9715743	Root	24.213

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	71.469
SRR8749028	MeJA induced 9h	45.714
SRR8749029	MeJA induced 9h	29.942
SRR8749030	Uninduced	22.431
SRR8749031	Uninduced	13.152
SRR8749032	Uninduced	11.195

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.991
SRR8400027	Control - Root	33.458