Gene detail

Gene detail information of Glyur002719s00034967.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G67310.1	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
NR	XP_004504403.1	PREDICTED: calmodulin-binding transcription activator 4-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9FYG2\|CMTA4_ARATH	Calmodulin-binding transcription activator 4
trEMBL	tr\|K7KQB0\|K7KQB0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G28090.3}

Sequence

Transcript Sequence

>Glyur002719s00034967.1
CAGCATGCAGCAATCTTAAATNAAATTTCTTACATCCGTTGGTCTTGGTCGTAGCTGTTGTTGTTTAATAAAAGCACGTTAACCTTAACTTTCTGCTTTTGCAATTCCTTTCTCTGATCCAAATCACTCCTCTCTCTCTCTCTCTGCTGTGTTGTTTTTTCACTAGTTGTAGAGCAACAGAATGCAGCAAATCTAGTAACCCCTCCGGTTTCAGGAAAAAAAAAATGCTCTCTTCCTCTCTCTGCAATCCNTCCAGTTACTTCTGCTTCTAGCTTTTGATTCTCCAGATTCAGTACCATGACACCTGGTCACGAGTACGATATCAATGATCTGTATCAAGAAGCTCAGAGGAGATGGCTGAAGCCTGCAGAAGTGATGTTCATTTTACAGAATCATGAAAAGTACCAATTCACCCAAGAGCCCCCGCAACAGCCAACCAGTGGATCCCTGTTTCTGTTTAACAGAAGAGTGTTGCGTTTCTTCCGTAAGGATGGTCATACCTGGCGGAAGAAAAGAGATGGAAGAGCTGTGGGAGAAGCACACGAACGGNTGAAGGTTGGAAACGTTGAAGCCTTAAATTGTTACTATGCACATGGAGAGCAGAACCCTACTTTCCAAAGGCGAAGCTATTGGATGTTGGATCCGGCATATGAGCATATTGTTCTTGTGCATTACAGAGACACAAGTGAGGGAAGGCCCAGTTCCAGACCTGGCACACAATTGTCACCAGGTTCCTCTTCTGCATTCGGTCAGAGTCCTAGCTCATATTCTCCTCAGAACCCAGGGTCAACATCCATTATTGATGATTCATATGAACCTAGTCAGAGTTTCTCCAGTCCTGGATCTGCAGAAGTTACCTCTGATATATTCATTGTGGACAATGGTGTGGGTCACTTGGATGGAACAGATGCAGAATCAGGAACCTCAACTAAACTTGAGATTACTCAAGCTTTGCGCCGATTGGAGGAACAGTTAAGTCTGAATGAGGACATCCTTGAAGAAATTACTCCTTTCTGCAATGAGCATGAAACTGCACATGATTCAAACCCTCAGCACCATCAAGGGGTGATTTGCAAACAAGAGAAATCTGCAGCTCTCTCTGAACCAGATGATCAGGGGCTATTTTATGATGGATATAATGGAAAGCAAGAGAGGAGAGTAAAAATGCTAAAGAAGGTGTATATTCTTGTAGAATTACTAGACCGTGGTTGCCCTGATGAAAATGAAAAGGCTTTATGGACAGAGTTGCTGGAATCGTATAAGTCCTCATCTGTGGCCAANTCACCACAGAAAAATGTATACACGCCAGCTGGAAATCAGGAAAATTCATCATCTTTAAAAAGGGAACCAGTTGCGAACCCAGAAAACTGTTGCTGGACAAATTTCAACAGTAATAATGCTGGCAACTCTGTTTTCTCACTATCTCAAGGTGTTGATGGAGTCAAACTTCCTCCATATTCTTCNATGGTAGAAACACAAGAAATTCATTCTGACTACTATGAAACATTGTTTGACCAAAGCCAAATCGGAGCATCTCTGGATGCAGGTTCAAGCTTAACTGTTGCACAAAAACAAAAATTTACCATTAAGGCAGTCTCCCCAGAATGGGGTTATGCCTCTGAGACTACAAAGGTCTTCATTATTGGGTCTTTTCTCTGTCATCCCTCGGATTCTTCCTGGGCCTGTATGCTTGGTGATGTTGAAGTTCCTGTTGAGATAATTCAGGATGGTGTAATTTGTTGTGAAGCTCCACCTNACATTTCTGGAAAGGTTACTCTGTGTGTTACTTCTGGAAACCGGGAGTCCTGCAGTGAAGTTAGAGAGTTTGAGTATCATAATAAGACCCCGAGTTGCACCCACTGTACTCCATTGGAAACAGAAGCCACAAGAACTCCAGAAGAGCTGTTATTACTTGTTAGATTTGGGCAGATGCTACTTTCTGCATCAACTATAGAGAGTGACAACAAGGAATCAGGAATTCCTTTCATAAAACGGAAAGCTGATGATGATACATGGAGCCATATAATAGAGGCTCTTCTAGTTGGCAGTGGAACTTCTTCTGGTACTATTAATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTGCAGCTGTGGCTTACTTGCAGATCCCAGGAAGTAGATGAAGAGACAGGCTGTTCTCTGTCCAAGAAAGAGCAGGGGATTATTCACATGGTTGCTGGGTTAGGTTTTGAGTGGGCCTTAAACCCTATTCTCAGTTGTGGTGTGAATATAAATTTCCGTGACATCAATGGGTGGACCGCCCTTCATTGGGCTGCCCGTTTTGGAAGGGAAAAAATGGTTGCGTCGCTTATAGCTTCTGGTGCATCTGCTGGAGCAGTGACAGATCCAAGTGCACAAGATCCAATTGGTAAAACTGCTGCATCAATTGCAGCCAGCAATGGGTACAAGGGTCTGGCAGGGTATCTTTCAGAGGTAGCTCTAACAAGCCATCTGTCATCTCTTACACTGGAAGAGAGTGAGCTATCTAAAAGTTCTGCGGAGATTCAAGCAGATTTAACAGTTAGTAGTGTCTCCAAGGAAGATATTGCTGCCAGTGAGGATCAGACCTCGCTCAAAGATACCTTGGCTGCTGTCAGAAATGCAACTCAGGCAGCCGCACGGATACAAGCAGCTTTTCGTTCACATTCATTTAGAAAACGGAGAGTGATAGAAGCAGCTACTGGCATAAATGGACATGGTATCAGTGACATTGGCGACATTCCAGAGCTTTCTGTTATGTCAAAACTTGCTTTTCGGAACTCACGCGAATATAATTCCGCTGCATTATCAATTCAAAAGAAGTATCGAGGTTGGAAAGGTCGCAAAGATTTCTTAGCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTATTATGGGCAGTTGGAATATTGGACAAGGTTGTGCTACGATGGCGNAGAAAAGGAGCCGGTTTACGAGGTTTCCGACCAGAGATGGAGATTAATGAAAATGAAGAAGATATTCTAAAGGTGTTCCGAAAACAGAAAGTAGATGTAGAGATTGAAAAGGCTGTTTCAAGGGTGATGTCTATGGTCAAATCTCCAGATGCTCGTCTACAATATCATCGCATGCTTGAGAAGTATCGTCAAGCCAAGGCTGAACTTGCGGGCACGAGTGAAGAAACATCGTCATCAACTTCTGTAGGGGATGGTCTTTTCAATATGGAAGATGATTTTTTTCAATTTCCCTAGGAGCAACGCTAGCATTACTAATTTCCACGCTTTTGAATGATCAATTTCCCATGATCATTGTATCTAGATGCTTAGAACAAGCTNACATTTTAGTTTTTGAAAAGGTAGATCGTATGTATAGTGATAGTGATGATGAACATTAATCTCTGTAAAATNTAGATTGGCTTTGAATGCAAGTTGGGTTTGGTTTCGAATTGAATGGATTAAGCTCCTTTCATATTTACTTGCGTGTACCNTTGGTATCTTCGCAATTTAGATGTAGCTTTTGTCAGCTTATAGGCATTCGAAAATATAGAATCATTGGATGATATGTTGGAAGAAAATTCATCAATGGCTTCTGCATTTTCTAGAGGAAGTGGTATCAGGAGTTGCTCTTGGTATTGTATCAGGATTTGGTCAAACAACCAGTCAGATTATGGCATTGGCACCGTCATATTTGCAAAGAAAACTGACATNGCAGAAGAAAAGGATGAATTTTATTTATATCACTTACCTGTATAACATTACTTTTCAGTATC

Protein Sequence

>Glyur002719s00034967.1
MTPGHEYDINDLYQEAQRRWLKPAEVMFILQNHEKYQFTQEPPQQPTSGSLFLFNRRVLRFFRKDGHTWRKKRDGRAVGEAHERXKVGNVEALNCYYAHGEQNPTFQRRSYWMLDPAYEHIVLVHYRDTSEGRPSSRPGTQLSPGSSSAFGQSPSSYSPQNPGSTSIIDDSYEPSQSFSSPGSAEVTSDIFIVDNGVGHLDGTDAESGTSTKLEITQALRRLEEQLSLNEDILEEITPFCNEHETAHDSNPQHHQGVICKQEKSAALSEPDDQGLFYDGYNGKQERRVKMLKKVYILVELLDRGCPDENEKALWTELLESYKSSSVAXSPQKNVYTPAGNQENSSSLKREPVANPENCCWTNFNSNNAGNSVFSLSQGVDGVKLPPYSSMVETQEIHSDYYETLFDQSQIGASLDAGSSLTVAQKQKFTIKAVSPEWGYASETTKVFIIGSFLCHPSDSSWACMLGDVEVPVEIIQDGVICCEAPPXISGKVTLCVTSGNRESCSEVREFEYHNKTPSCTHCTPLETEATRTPEELLLLVRFGQMLLSASTIESDNKESGIPFIKRKADDDTWSHIIEALLVGSGTSSGTINWLLEELLKDKLQLWLTCRSQEVDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVASLIASGASAGAVTDPSAQDPIGKTAASIAASNGYKGLAGYLSEVALTSHLSSLTLEESELSKSSAEIQADLTVSSVSKEDIAASEDQTSLKDTLAAVRNATQAAARIQAAFRSHSFRKRRVIEAATGINGHGISDIGDIPELSVMSKLAFRNSREYNSAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGAGLRGFRPEMEINENEEDILKVFRKQKVDVEIEKAVSRVMSMVKSPDARLQYHRMLEKYRQAKAELAGTSEETSSSTSVGDGLFNMEDDFFQFP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02719	14408	23008	+

Gene family

Gene family	subfamily
Transcription Factors Family	CAMTA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002719s00034967.1	PF03859.11	CG-1	13	129	1.60E-52
Glyur002719s00034967.1	PF01833.19	TIG	429	512	2.70E-08
Glyur002719s00034967.1	PF12796.2	Ank_2	620	684	2.30E-08
Glyur002719s00034967.1	PF00612.22	IQ	834	852	0.013
Glyur002719s00034967.1	PF00612.22	IQ	857	876	3.00E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.680
SRR1783600	control	14.746
SRR1783602	moderate drought stress	16.267
SRR1811619	moderate drought stress	15.928

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.044
DRR006520	Root Summer glycyrrhizin high producing strain	10.761
DRR006521	Root Winter glycyrrhizin high producing strain	23.756
DRR006522	Root Winter glycyrrhizin high producing strain	23.245
DRR006523	Root Summer glycyrrhizin low producing strain	15.003
DRR006524	Root Summer glycyrrhizin low producing strain	15.110
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.809
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.855

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.794
SRR2868004	Drought Stress (root)	25.489
SRR2967015	Control (root)	30.010

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.652
SRR9715740	Leaf	10.006
SRR9715741	Leaf	12.652
SRR9715739	Root	4.988
SRR9715742	Root	17.242
SRR9715743	Root	15.372

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.217
SRR8749028	MeJA induced 9h	12.703
SRR8749029	MeJA induced 9h	11.570
SRR8749030	Uninduced	13.381
SRR8749031	Uninduced	14.342
SRR8749032	Uninduced	9.038

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.089
SRR8400027	Control - Root	24.373