Gene detail

Gene detail information of Glyur002717s00038040

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G15250.1	FTSH protease 6
NR	XP_003552529.1	PREDICTED: ATP-dependent zinc metalloprotease FTSH 6, chloroplastic-like [Glycine max]
COG	YP_007128045.1	membrane protease FtsH catalytic subunit [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q1PDW5\|FTSH6_ARATH	ATP-dependent zinc metalloprotease FTSH 6, chloroplastic (Precursor)
trEMBL	tr\|I1N4D7\|I1N4D7_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G49440.1}

Sequence

Transcript Sequence

>Glyur002717s00038040.1
CGTGAATGAAAAATAGNACAAGAGATCAAAAATCTCACTCAAAGAAAATTCCAAATTGAAGTACCAGAAGCTTCTCACTTCTCTCTTTTTTAAAAACAAACTCTGCTCCTTCCCTTGGAATCAATCAATTTTTACACTCCTCAAGTCACTGAAGAAAAGCTGCAATTTTGCAACATCACCAGACTCTTGTATTCAACGCCACATATTCAAATTAGGTGACAATTTGCAGTTATAAAATGTCTTCTGCTCTATCTCTCTCAGTCTCCCCCACTTTGATCTTCAAGCCTCAAAACCTTTCAAAATCCAACAAGAAAGAAAACCCATGTCCACAGACTGTGTTAGAAAACAAAGTCAGCAAGAGGAAGCTATTGTCATCAACTGTCCTTGGATTGGGCCCAACTTGNGCTGGGCTATCAGTTGCTCAGCCCACCAGAGCTGAGCCAGAGAGCCCTGTTGCTTCCTCCTCAAGTAGGATGTCATACTCAAGGTTCTTGCAGTACTTGGATGAAGGTGCTGTCAAGAAGGTGGACCTCTTTGAGAATGGCACAGTTGCTGTTGCAGAGATATATAACCCGACATTGGACAAAATCCAAAGGGTCAAGATTCAGTTGCCAGGGCTGCCTCAGGAGTTGCTCAGGAAAATGAAAGACAAAAATGTTGATTTTGCTGCTCATCCCATGGATGCAAATTGGGGGGCTGCAATACTTGATTTGTTGGGAAATTTGGCCTTTCCTTTGATATTGCTTGGTAGTCTACTCCTCAGGACANCTAGAAATAATCCTGCTGGTGGCCCCAACTTGCCCTTTGGACTAGGAAGGAGTAAGGCAAAATTTGAGATGGAGCCAAATACAGGAGTGACATTTGAGGATGTAGCTGGAGTTGATGAAGCCAAGCAAGATTTCCAAGAGATTGTTGAGTTCTTGAAGACCCCTGAGAAGTTTTCTGCTGTTGGAGCAAAAATCCCCACAGGAGTTCTATTGGTAGGGCCACCAGGGACTGGAAAGACATTGCTGGCCAAGGCAATTGCAGGAGAAGCTGGGGTTCCTTTCTTTTCTCTATCTGGTTCAGAGTTTATTGAGATGTTTGTGGGTGTTGGGGCTTCAAGGGTGAGGGATTTGTTTAACAAGGCCAAACAGAATTCACCTTGTTTGATATTCATTGATGAGATAGATGCTGTAGGGAGGCAGAGAGGTACAGGCATAGGTGGAGGGAATGATGAAAGAGAGCAAACACTGAATCAGTTGCTCACTGAAATGGATGGTTTCACTGGAAACACTGGTGTTATAGTTATTGCTGCCACTAACAGACCTGAAATCCTTGACTCAGCATTGCTTAGACCTGGGAGGTTTGATAGGCAGGTAACTGTTGGATTACCAGATATTAGAGGGAGGGAAGACATATTGAAAGTTCATAGTAACAGCAAGAAGATTGACAAGGATGTCTCTATTAGTGTCATTGCCATGAGAACTCCAGGATTCAGTGGTGCAGACCTGGCAAACCTCATGAATGAAGCTGCCATTCTAGCCGGTCGAAGGGGCAAAGAGAAGATCACAATGAAAGAAGTTGATGACTCCATAGATCGCATTGTGGCGGGCATGGAGAGAACCAAGATGACTGATGGCAAGAGCAAAATTCTGTTAGAAGCAAATTCAAAATGGGCCTTGACACTGACCCCTGGACATGATCCAGTACAAAAAGTCACTCTAGTTCCCAGAGGCCAAGCCCGGGGCTTAACATGGTTCATACCANGTGAAGATCCTGCTCTAATCTCTAAGAATCAACTATTTGCTAGAATAGTTGGAGGCCTAGGTGGTAGAGCAGCAGAGGAAGTCATATTTGGTGAAACTGAGATAACCACTGGAGCTGCTGGAGACTTGCAACAAATTACACAAATAGCAAGACAGATGGTTACAATGTTTGGCATGTCTGAGATTGGACCATGGGCATTAATTGATCCTGCAGTTCAAAGTGGTGATGTAGTGCTAAGGATGCTGGCAAGGAACTCAATGTCTGAGAAACTAGCTGAGGACATTGATAACTCGGTGAGGCAGATAATAGAGACAGCATATGAAGTTGCAAAGAATCACATAAGGAATAACCGTGATGCAATTGATAAATTAGTGGATGTGCTGCTTGAGAAAGAGTCTCTTACTGGAGATGAATTCAGAGCAATCTTGTCAGAATTCACAGATATTTCTTCAATTAAGATAGATAGAACCACTGTCCGGGAAATGATTGAAGCACAACAATAGTTTCAGTGACAAGGAAGATAGCTTTGTAATGCGGTAGGATGAAGTTGTACATGAGTTTGCAGTATAGATCATAGAGTATAGTTCTGAGATAGTGTTTTCCTTTTCGATTCTTACCTTTCACTTGTTTCAAAAGTTAGTTCATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02717	25110	28213	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016020 membrane

molecular_function

GO:0004222 metalloendopeptidase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002717s00038040.1	PF00004.24	AAA	246	378	2.30E-45
Glyur002717s00038040.1	PF01434.13	Peptidase_M41	439	646	5.50E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.527
SRR1783600	control	1.551
SRR1783602	moderate drought stress	2.563
SRR1811619	moderate drought stress	2.577

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.484
DRR006520	Root Summer glycyrrhizin high producing strain	3.465
DRR006521	Root Winter glycyrrhizin high producing strain	2.985
DRR006522	Root Winter glycyrrhizin high producing strain	2.941
DRR006523	Root Summer glycyrrhizin low producing strain	2.731
DRR006524	Root Summer glycyrrhizin low producing strain	2.619
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.155
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.061

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.222
SRR2868004	Drought Stress (root)	1.393
SRR2967015	Control (root)	1.083

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.474
SRR9715740	Leaf	2.964
SRR9715741	Leaf	1.878
SRR9715739	Root	0.144
SRR9715742	Root	3.490
SRR9715743	Root	2.096

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.226
SRR8749028	MeJA induced 9h	0.111
SRR8749029	MeJA induced 9h	0.025
SRR8749030	Uninduced	0.026
SRR8749031	Uninduced	0.021
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.220
SRR8400027	Control - Root	3.648