Gene detail

Gene detail information of Glyur002717s00038039

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G15240.1	2.00E-134	Transmembrane amino acid transporter family protein
NR	XP_003621231.1	0	Vacuolar amino acid transporter [Medicago truncatula]
Swissprot	tr\|Q9FKS8\|LHT1_ARATH	7.00E-15	Lysine histidine transporter 1
trEMBL	tr\|Q2HUT2\|Q2HUT2_MEDTR	0	Transmembrane amino acid transporter family protein {ECO:0000313\|EMBL:AES77449.1}

Sequence

Transcript Sequence

>Glyur002717s00038039.1
CTTAGTTTTTAGTTTTTACTGGGTGACACAGGCCCAATAACGAAACCCTTTCTCTCTGTCTGTATCTCTCTCTCTCTCTGCCCCCAATGGAAGACGACGATGTCGCTCTGAACGTTCCCCTAATTGCAGACCGAAACCTACACCGGGACGAAAGTAGCCAAGTTTGCAGTAACGGTCCCAGCAATGCCACCACGTCTTTCCTCAGCACCTGTTTCAATGGGCTCAACGCTTTGTCAGAAAAACTTGACAACAACAACTCACCCTTGAGTGCGCCTCTACTATCTGAGTGGAAACACCATGAGCTAGGGCATGCCATAGATGATGAGGAGGAAATCATCACAGCCTCTCATCCTCCAATCAAAAGTACCGCATCCTTCTTTCGCACCTGTCTTAATGGACTCAATGCAATTTCAGGTGTTGGGATACTCTCGGTTCCATATGCTCTAGCATCTGGAGGATGGTTAAGCTTGATTCTTTTGTTTGCTATTGCTGCTGTAGCCTTTTACTCAGGCTTGTTGATGAAAAGATGTATGGATAAGAATTCAAATGTTAGAACGTACCCTGACATAGGTGAGCTTGCATTTGGGAAGACAGGAAGAATGATAGTATCAGTATCCATGTACACAGAGCTCTACTTGGTTTCAATAGGGTTCTTGATTCTAGAAGGGGACAACTTGAGTCATCTATTCCCCATTGGGGAGTTTCGAGTGGCTGGTTTAGCAATTGGTGGGAAACAATTCTTTGTGATATTGGTTTCACTTATTGTCTTGCCCACGGTTTGGTTGGACAACTTGACCCTGCTTTCTTATGTATCTGCAAGTGGGGTGTTTGCTTCTGCTATCATCATCTTGTCAATTTCATGGACTGGAGCAATTGATGGAGTTGGTTTTCACCAAAAGGGAAGTACTCTTGTTAATTGGAATGGGATCCCCACAGCTGTGAGCTTGTATGCCTTTTGTTATTGTGCACATCCAGTCTTCCCCACTCTGTACAATTCCATGAGAAACAAACACCAGTTCTCTAATGTCCTACTTGTATGCTTTGTGTTNGCCACAGCTAGTTATGCATCCATGGCTATAATTGGCTACCTAATGTTTGGTTCAGGCGTTGAATCACAAGTAACATTAAACCTGCCACTAGACAAAATAAGCTCAAGGGTAGCAATTTACACAACNTTGGTCAATCCCATATCCAAATTTGCTTTGATGACAACACCAATTACCAATGCTCTGAAAGATTTGCTTCCAATGACATACAAGAACAATAGAGCAACCAACATCTTAGTGAGCACANTGATGGTGATAAGCACGGTCATTTTTGCCCTCACCGTTCCTTTCTTTGGGTATCTCATGTCACTGGTTGGTGCGTTCCTTAGTGTGACAGCTTCAATTCTGCTTCCATGTTTGTGCTACTTAAGGATTACAGGGACATACAGGGAATTTGGGTTTGAGACGGTAGCCATAATGGTAATAATGTTAGCAGCTATAGTAATGGGGATATCTGGGACATACAATGCGATTATTGACATAGTCCAACATTTGTAATGAGGTATAGTGGTTGGTCCCTTCTCTACACACGAGTACGACAATGAAATGGGACGTAACGTGATGCTGCGAATTATACCCTGTTTTTCGCATATTTCGATTTTGACGGGATTTTTTTTGTTGATTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02717	14922	22120	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002717s00038039.1	PF01490.13	Aa_trans	94	474	5.60E-57
Glyur002717s00038039.2	PF01490.13	Aa_trans	46	426	3.90E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.385
SRR1783600	control	3.403
SRR1783602	moderate drought stress	5.259
SRR1811619	moderate drought stress	5.550

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.286
DRR006520	Root Summer glycyrrhizin high producing strain	4.211
DRR006521	Root Winter glycyrrhizin high producing strain	5.239
DRR006522	Root Winter glycyrrhizin high producing strain	5.970
DRR006523	Root Summer glycyrrhizin low producing strain	0.946
DRR006524	Root Summer glycyrrhizin low producing strain	1.028
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.488
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.449

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.375
SRR2868004	Drought Stress (root)	11.876
SRR2967015	Control (root)	19.669

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	72.575
SRR9715740	Leaf	27.479
SRR9715741	Leaf	33.890
SRR9715739	Root	2.846
SRR9715742	Root	6.146
SRR9715743	Root	5.598

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.698
SRR8749028	MeJA induced 9h	1.950
SRR8749029	MeJA induced 9h	0.827
SRR8749030	Uninduced	5.930
SRR8749031	Uninduced	6.780
SRR8749032	Uninduced	3.577

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.850
SRR8400027	Control - Root	5.040