Gene detail

Gene detail information of Glyur002717s00038038

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G37820.1	7.00E-36	NOD26-like intrinsic protein 4;2
NR	XP_003621222.1	4.39E-101	Aquaporin NIP2-1 [Medicago truncatula]
COG	YP_007114168.1	1.00E-32	MIP family channel protein [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|Q19KC1\|NIP21_MAIZE	8.00E-66	Aquaporin NIP2-1
trEMBL	tr\|G7L100\|G7L100_MEDTR	2.00E-101	Major intrinsic protein (MIP) family transporter {ECO:0000313\|EMBL:AES77440.1}

Sequence

Transcript Sequence

>Glyur002717s00038038.1
ATGGAGGGGTCGGACCGAATAACATGCAGTAGTTTCGTCAGTGATACAAATGATGAGTCTCAAAAGCCCAGAACCCAAATGCAATCTCTCTATCTCTCTTTTGCAAAACTTGTAGGGAATTACCCTCCTGGCTTTCCCAGAAAGGTATTTGCAGAGGTAATAGGAACCTTTTTGTTGGTGTTTGTGGGAAGTGGCTCTGCTGCTCTTAGTGAAATTGATGAAAACAAAGTCTCAAAATTGGGAGCTTCACTTGCAGGAGGATTTATAGTGACGGTCATGATTTATTCCATTGGACACATCTCTGGCGCTCACATGAATCCCGCTGTCTCCTTAGCCTTTGCCGCCGTCAGCCATTTTCCTTGGAAACAGGTCCCATTTTACATTGCAGCTCAACTCACAGGGGCCATTTCTGCCTCATACACGCTGCGAGTGCTGTTAGAGCCAGCAACGCAGCTAGGAGCAACTTCACCTTCTGGATCAAACATTCAAGCACTAATCATGGAAATTGTGTCCACCTTCACCATGATGTTCATCTCCACCGCAGTTTCCACTGACTCAAAAGCTATAGGAGAGCTGGCAGGAGTAGCTGTAGGTTCATCTGTTAGCATAGCAAGCATTGTCGCCGGGCACGTAACAAGTCCACAATCTTTGTGGCAGGTCCCATTTTACATTGCAGCTCAACTCACAGGGGCCATTTCTGCCTCATACACGCTGCGAGTGCTGTTAGAGCCAGCAACGCAGCTAGGAGCAACTTCACCTTCTGGATCAAACATTCAAGCACTAATCATGGAAATTGTGTCCACCTTCACCATGATGTTCATCTCCACCGCAGTTTCCACTGACTCAAAAGCTATAGGAGAGCTGGCAGGAGTAGCTGTAGGTTCNTCTGTTAGCATAGCAAGNATTGTCGCCGGTCCAATATCAGGGGGGTCCATGAACCCAGCAAGGACATTAGGTCCTGCAATTGCANGTGCTTCCTACAGGGGAATTTGGGTNTATTTGGTTGGACCNGTNACTGGGGCACTCTTAGGTGCGTGGTCTTACGTTGTGGTTCAGGAGACAGATAAANCAGCCCTTGCANCTTCANCGTCTNCCCTTTCACTCAAGCNANACCATGGAACAACGAGTGGAGTTGAACTAGTTGGTAATAAGGACAACCAATGCTCGGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02717	4315	9117	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002717s00038038.1	PF00230.15	MIP	45	212	5.60E-33
Glyur002717s00038038.1	PF00230.15	MIP	213	348	3.90E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.249
SRR1783600	control	0.291
SRR1783602	moderate drought stress	0.239
SRR1811619	moderate drought stress	0.243

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.216
DRR006522	Root Winter glycyrrhizin high producing strain	0.103
DRR006523	Root Summer glycyrrhizin low producing strain	0.213
DRR006524	Root Summer glycyrrhizin low producing strain	0.176
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.161
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.072

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.328
SRR2868004	Drought Stress (root)	10.824
SRR2967015	Control (root)	8.184

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.600
SRR9715740	Leaf	6.505
SRR9715741	Leaf	8.641
SRR9715739	Root	0.063
SRR9715742	Root	0.051
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.135
SRR8749028	MeJA induced 9h	0.028
SRR8749029	MeJA induced 9h	0.090
SRR8749030	Uninduced	0.027
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.836
SRR8400027	Control - Root	10.838