Gene detail information of Glyur002715s00045815 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54980.1 | 5.00E-42 | Uncharacterised protein family (UPF0497) |
| NR | AFK35918.1 | 5.23E-94 | unknown [Medicago truncatula] |
| Swissprot | tr|C6T2J5|CSPL4_SOYBN | 3.00E-85 | CASP-like protein 2D1 |
| trEMBL | tr|I3S6M6|I3S6M6_MEDTR | 2.00E-94 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02715 | 24264 | 28054 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002715s00045815.1 | PF04535.7 | DUF588 | 8 | 146 | 6.60E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.434 |
| SRR1783600 | control | 8.265 |
| SRR1783602 | moderate drought stress | 3.209 |
| SRR1811619 | moderate drought stress | 2.906 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.480 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.380 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.332 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.621 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.741 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.678 |
| SRR2868004 | Drought Stress (root) | 37.136 |
| SRR2967015 | Control (root) | 20.387 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.938 |
| SRR9715740 | Leaf | 0.823 |
| SRR9715741 | Leaf | 2.021 |
| SRR9715739 | Root | 3.133 |
| SRR9715742 | Root | 8.147 |
| SRR9715743 | Root | 7.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 94.326 |
| SRR8749028 | MeJA induced 9h | 55.826 |
| SRR8749029 | MeJA induced 9h | 84.042 |
| SRR8749030 | Uninduced | 16.095 |
| SRR8749031 | Uninduced | 8.301 |
| SRR8749032 | Uninduced | 16.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.293 |
| SRR8400027 | Control - Root | 14.876 |