Gene detail

Gene detail information of Glyur002701s00040536

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G30600.1	0	signal recognition particle receptor alpha subunit family protein
NR	XP_003527179.1	0	PREDICTED: signal recognition particle receptor subunit alpha-like [Glycine max]
COG	NP_126193.1	3.00E-58	signal recognition particle receptor [Pyrococcus abyssi GE5]
Swissprot	tr\|P37107\|SR54C_ARATH	4.00E-31	Signal recognition particle 54 kDa protein, chloroplastic (Precursor)
trEMBL	tr\|I1KDE5\|I1KDE5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G28570.1}

Sequence

Transcript Sequence

>Glyur002701s00040536.1
ACCGGCCCGTGCTCACCCCTACTCGGCTCTAAGAAACAACAGGTACCTTTCCCCCGCTGCGATGATTTTCCTTATTCCCATCAACTTTCTCGCTTCAGTCCAATTTATTTTATTTTCAGTTTATCCGTTGATTATCATCAATTAACACGAACTCACGAACCCAAACATGTTTTACCTATGATGAGGTTTTAGGTGTTTTGCCCGAATCTGAAAATTTCCGAAACATTATTATTCGTTTTCCTCATATTGTTTCTGGTTATTATTAATAATAACAGGATATCTGCAAGTAAGTAATCAAGGATGTTAGAGCAGTTACTAATATTTACAAGAGGAGGGTTAATCCTATGGACTTGTAAAGAACTTGGGAACGCCCTAAAAGGTTCACCTATTGATACCTTGATCCGTTCCTGTCTTTTGGAGGAGCGATCCGGTGCGGCATCGTACAATTACGATGCCCCCGGTGCTTCCTACACCCTCAAGTGGACCTTCCACAATGAACTTGGCCTTGTGTTTGTGGCTTTGTACCAACGGATCCTTCACCTGTTGTATGTGGAGCATCTGCTGGCTATGGTGAAGCATGAGTTCTCGATGGTTTACGATCCGAAGAGGACCGCCTACCCTGACTTTGATGAGACCTTTAGGCAGTTGAAGGCGGAAGCCTTGGCTCGCGCTGAGGATTTGAAGAGGTCGAATCCCGTGGTGGGGAATGTCAAGAAACAGGGGCAGGGGAATAATAAGGCTGGATTTGAGGGAGGGAGTAAGAAGAAGAGTAGTGATGGTGGTGGTGCTACGAAGAGCGATGGCAGCGGCGGGGGCGGTGACAATGGAAAGGGACGTAGTAAGAAGTTGGAGAATGGGCACTCCAATGGCAATTTTGTTGTTGCTAAAGATTCTAACCTGAATAGTAATGTAAATGGTAGAGAGAATGCGAGTTCCAATGATGTTGGGGCTTTTGATGTACATAAGCTTCAGAAGAAACTTAGGACCAAAGGTGGAAAGAAGACGGATACTGTTGCTGCCAAGGCTTCCAAGGCAGAGCCAAACAAGAAAGTGACGAAGAAAAATAGAGTTTGGGATGAGGCTACAACTCCTGAAACAAAACTGGACTTTACTGATCATTTGGGTGCAGATGGGGACACGAACATAGATTTTGTGGCTACGGATCAAGGGGAAAGTATGATGGATAAAGAGGAAATTGTTAGCAGTGAAAGCGAGGATGAGGAAGATGATGCCACGGGGAAGAACAGCAAGCCTGATGCTAAAAGCAAGGGTTGGTTTTCATCCATGTTCCAGAGTATTGCAGGGAAGGCAAATTTGGAGAAGTCAGACTTGGAACCGGCTCTGAAAGCTCTAAAGGATAGGCTCATGACCAAGAACGTGGCTGAGGAGATAGCTGAGAAACTCTGTGAATCAGCAGCAATGGAAGAAGNTCTTGTTCGAATTTTAACTCCTAAACGTTCTATTGATATATTGAGGGATGTGCATGCTGCCAAGGAGCAAAGGAAACCTTATGTTGTTGTATTTGTNGGTGTTAATGGTGTTGGAAAATCTACTAATCTAGCTAAGGTTGCTTACTGGCTTCTGCAGCACAATGTTAGTGTTATGATGGCTGCTTGTGACACATTTCGATCAGGTGCTGTTGAGCAGCTGCGGACCCATGCTCGGAGACTTCAGATCCCCATATTTGAGAAGGGCTATGAAAAAGATCCTGCTGTTGTGGCAAAAGAAGCAATTCAGGAAGCTTCACGCAACGATTCAGATGTGGTTTTAGTTGATACAGCTGGTCGTATGCAGGATAATGAACCATTGATGAGAGCACTGTCAAAACTTATCTACCTCAACAATCCAGGTCTAGTCTTATTTGTCGGAGAAGCACTAGTTGGTAACGATGCAGTTGATCAGCTTTCAAAATTCAATCAGAAACTAGGGGACCTCTCAACATCTCCCAATCCAAGATTGATAGATGGGATCTTGCTCACAANGTTTGACACCATTGATGATAAGGTGGGTGCTGCACTTTCAATGGTTTACATATCTGGAGCTCCTGTCATGTTTGTGGGCTGCGGACAGTCTTATACCGACCTCAAGAAACTCAATGTCAAATCAATTGTGAAGACTCTCCTTAAGTAAAAGGGAAAAATTGGCTGGAAAAACTCTTCTGGCTCTGACTTTTGAGGCAATTTGGTTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02701	29961	34986	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006614 SRP-dependent cotranslational protein targeting to membrane

GO:0006810 transport

GO:0006886 intracellular protein transport

cellular_component
GO:0005785 signal recognition particle receptor complex

molecular_function

GO:0003924 GTPase activity

GO:0005047 signal recognition particle binding

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002701s00040536.1	PF04086.8	SRP-alpha_N	28	309	2.30E-50
Glyur002701s00040536.1	PF02881.14	SRP54_N	325	391	4.10E-05
Glyur002701s00040536.1	PF00448.17	SRP54	404	608	6.30E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.061
SRR1783600	control	7.953
SRR1783602	moderate drought stress	10.070
SRR1811619	moderate drought stress	10.028

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.960
DRR006520	Root Summer glycyrrhizin high producing strain	6.605
DRR006521	Root Winter glycyrrhizin high producing strain	7.712
DRR006522	Root Winter glycyrrhizin high producing strain	7.756
DRR006523	Root Summer glycyrrhizin low producing strain	1.014
DRR006524	Root Summer glycyrrhizin low producing strain	0.725
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.600
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.793

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.953
SRR2868004	Drought Stress (root)	1.535
SRR2967015	Control (root)	1.478

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.203
SRR9715740	Leaf	6.100
SRR9715741	Leaf	4.959
SRR9715739	Root	2.339
SRR9715742	Root	8.201
SRR9715743	Root	6.959

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.711
SRR8400027	Control - Root	11.093