Gene detail information of Glyur002700s00036105 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05590.1 | 2.00E-86 | ribosomal protein L18 |
| NR | NP_001236071.1 | 1.16E-125 | uncharacterized protein LOC100499789 [Glycine max] |
| COG | NP_126222.1 | 2.00E-09 | 50S ribosomal protein L18e [Pyrococcus abyssi GE5] |
| Swissprot | tr|P42791|RL182_ARATH | 1.00E-116 | 60S ribosomal protein L18-2 |
| trEMBL | tr|I1JQM9|I1JQM9_SOYBN | 4.00E-126 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G37340.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02700 | 25860 | 27991 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002700s00036105.1 | PF00828.14 | Ribosomal_L18e | 2 | 122 | 5.20E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 199.725 |
| SRR1783600 | control | 199.256 |
| SRR1783602 | moderate drought stress | 159.042 |
| SRR1811619 | moderate drought stress | 156.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 117.538 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 116.410 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 65.283 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 64.722 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 81.074 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 81.266 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.524 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 178.254 |
| SRR2868004 | Drought Stress (root) | 104.961 |
| SRR2967015 | Control (root) | 99.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 55.729 |
| SRR9715740 | Leaf | 44.930 |
| SRR9715741 | Leaf | 42.650 |
| SRR9715739 | Root | 69.213 |
| SRR9715742 | Root | 66.037 |
| SRR9715743 | Root | 59.248 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 159.015 |
| SRR8749028 | MeJA induced 9h | 58.156 |
| SRR8749029 | MeJA induced 9h | 110.754 |
| SRR8749030 | Uninduced | 17.680 |
| SRR8749031 | Uninduced | 13.480 |
| SRR8749032 | Uninduced | 28.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 85.780 |
| SRR8400027 | Control - Root | 74.663 |