Gene detail information of Glyur002700s00036103 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02816.1 | 6.00E-39 | Protein of unknown function, DUF538 |
| NR | XP_004494381.1 | 1.67E-82 | PREDICTED: uncharacterized protein LOC101515317 [Cicer arietinum] |
| Swissprot | tr|Q9M015|Y5161_ARATH | 5.00E-15 | Uncharacterized protein At5g01610 |
| trEMBL | tr|A0A072U4X7|A0A072U4X7_MEDTR | 5.00E-80 | DUF538 family protein {ECO:0000313|EMBL:KEH24391.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02700 | 13112 | 13627 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002700s00036103.1 | PF04398.7 | DUF538 | 41 | 148 | 1.90E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.819 |
| SRR1783600 | control | 27.640 |
| SRR1783602 | moderate drought stress | 6.871 |
| SRR1811619 | moderate drought stress | 8.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.624 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.594 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.680 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.402 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.123 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.818 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.594 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.446 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 48.623 |
| SRR2868004 | Drought Stress (root) | 19.338 |
| SRR2967015 | Control (root) | 23.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.760 |
| SRR9715740 | Leaf | 2.004 |
| SRR9715741 | Leaf | 2.453 |
| SRR9715739 | Root | 46.290 |
| SRR9715742 | Root | 40.205 |
| SRR9715743 | Root | 42.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.122 |
| SRR8749028 | MeJA induced 9h | 0.352 |
| SRR8749029 | MeJA induced 9h | 0.191 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.149 |
| SRR8749032 | Uninduced | 0.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 54.436 |
| SRR8400027 | Control - Root | 61.005 |