Gene detail

Gene detail information of Glyur002700s00036101

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02820.1	2.00E-16	Late embryogenesis abundant 3 (LEA3) family protein
NR	NP_001237596.1	6.09E-46	uncharacterized protein LOC100527032 [Glycine max]
Swissprot	tr\|P32292\|ARG2_VIGRR	2.00E-39	Indole-3-acetic acid-induced protein ARG2
trEMBL	tr\|C6T331\|C6T331_SOYBN	2.00E-46	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G02070.1}

Sequence

Transcript Sequence

>Glyur002700s00036101.1
CCCAGAACAAACGGCACTATGAATCTACAAACAGGTGGCAGCAAACTGGAGGTCACTCGCATATATAATTTCTCGTATCTCTTGACGCGGCTAATATTCCGCCTTAACCCAAATTACCATCTCTTTCACTCACGCGTGACGTGTCCCCTTCCCCCTTCTTTTCGTTGCCCTATATAAATGAGCCCCCCCACCTCTTTCTCCTTAGTAGTGGCAACTCAAATTTAAAGCCATCTAATCTAAGGGGTGAAAAGAGAGACACAGAGAGAGCGAGTCCATTGCGATAACTTACGACTGTGGGAAGCTAATTCTTTTCTCTGATTNACAACAGGGTTCCGATATTCATATCAAAGAAAAAAAAAATAAGCTTTCCACAGTTTTCTTCAATTTCGATTTGAATCACCAATGGCTCGTTCTTTCGCTAACGCCAAGTTTCTCTCTGCTCTCGCCCTTGACGGTTTCTCCAACACTCTCACCAGACGAGGTTACGCTGCCGCAACAGGAAGCGCAACAAGGGGAGGAGTTGTCTCCATCGGTGGCAAAGTGGCACCAAAATCAGGGGAAGACAAAGCCTCCACTTACAAGGTTTCGTGGGTACCAGACCCTGTCACTGGTTACTACAAACCAGAGAATACCAAGGAGATCGACGTCGCAGATTTACGCGCTACTCTTCTGGGCAAAAAACTCAACAACTAAATTAATTAATCTCAATCAATTAAACAAATATTGTCTTCCATATAATCATTTATTTTTTTATATTAAAAAATAAATATCTATCTGGGATTGGCGATTTCAACGGTGGGTTTCTTGAGAAAAATGCCTCGAGTGATTCTATTAATGATGAAGATCACCATATGGAACGTTGATGTTCGATATATATATATACTCTGTTCTGATGTCCCCTACTAGATAAAGAGAANACCATATAACTTTTATGGTTTCTTCCCTGTCCATTTATCTTGCACCTGGTGTTAGCTTTATAAACCAGTAGAACGAACACTAAGCATTAGCAGCTGATCAAAAGTGTAATGTCTTCTAATCTTATTGAATACAATTTTTATTTTTACTTTAAAANATAGTTTTCAGTGTGATGGGATTTTTGCTTGAACATCTTAAACTGGGTTAGGAGAGATTACGTACTTCGGCTAAGAACGTAACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02700	7489	8756	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006950 response to stress

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002700s00036101.1	PF03242.8	LEA_3	1	90	3.40E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	87.904
SRR1783600	control	88.072
SRR1783602	moderate drought stress	38.989
SRR1811619	moderate drought stress	37.985

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	293.380
DRR006520	Root Summer glycyrrhizin high producing strain	289.904
DRR006521	Root Winter glycyrrhizin high producing strain	350.308
DRR006522	Root Winter glycyrrhizin high producing strain	341.196
DRR006523	Root Summer glycyrrhizin low producing strain	544.632
DRR006524	Root Summer glycyrrhizin low producing strain	543.412
DRR006525	Leaf Summer glycyrrhizin high producing strain	151.124
DRR006526	Leaf Summer glycyrrhizin high producing strain	150.475

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	119.646
SRR2868004	Drought Stress (root)	168.231
SRR2967015	Control (root)	138.614

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1014.516
SRR9715740	Leaf	634.928
SRR9715741	Leaf	962.250
SRR9715739	Root	273.388
SRR9715742	Root	584.571
SRR9715743	Root	514.831

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	573.525
SRR8749028	MeJA induced 9h	663.660
SRR8749029	MeJA induced 9h	918.734
SRR8749030	Uninduced	92.151
SRR8749031	Uninduced	48.157
SRR8749032	Uninduced	174.644

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	325.496
SRR8400027	Control - Root	336.564