Gene detail

Gene detail information of Glyur002698s00041215

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	4.00E-93	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_003607596.1	0	Tir-nbs-lrr resistance protein [Medicago truncatula]
COG	YP_003383338.1	4.00E-09	XRE family transcriptional regulator [Kribbella flavida DSM 17836]
Swissprot	tr\|Q40392\|TMVRN_NICGU	2.00E-113	TMV resistance protein N
trEMBL	tr\|G7JCM4\|G7JCM4_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:AES89793.1}

Sequence

Transcript Sequence

>Glyur002698s00041215.1
ATGGCTAGCAGTAGCATCCCAAGCAGTTCTTTAGCTTTGGTGACAAAGAAATATGACGTGTTTGTCAGCTTCAGAGGTCAGGACACGCGCAACAATTTCACTAATCATCTCTTTGGTGCCTTCCAAAGAAAAGGCATTTTTGCATTCCGGGATGACAAAAACCTCAGGAAAGGAGAATCCATAGCGCCTGAGCTACTTTGTGCAATTGAAGCGTCTCGTGTTTATGTTGTGATCCTTGAATGCGTTCATGTATCAGGAAAACGTGTTCTGCCTATTTTTTGCGATGTTGATCCATCTGAGGTGCGATCTCAAAAAGAAAGTTATGCTGAAGCCTTTGCCAAACATGAAAAAAGATTCAAACAAGATTCAGAGATGGTGCAGAGATGGAGGGTGGCTCTCACTCAAGTGGCAAATCTCTCTGGTTGGGATCTACGTGATAAGCCACAATATGTTGAGATTGAAAAGATTGTTGAAGAGATAATAAATATGCTGGGTTACAAATTTTCAAGTCTTCCAAATGATTTAGTTGGGATGGATTCTCCTATAGAAGAATTAGAAAAGCTTTTACTTTTGGACTCGGTTGATGATGATGTTCGGGCTGTAGGAATTTGTGGCATGGGTGGATCAGGGAAGACAACTCTTGCCACTATTTTGTATGGCAGAATCTCTCATCAATTTGATGCATGTTGTTTTATTGACGATGTGAGCAAAATTTATAGACATTATGGTCCAATTGGAGTACAAAAGCAAATTCTACATCAAACTCTAGGTGGAGAACACCTTCAGATATGCAATCTTTATAATGCAACTAACTTGATACGAAGTAGGCTACATCAAGTAAATGCCCTTATAATTCTTGATAATGTTGATCAAGTTGAACAGCTGAAAAAATTAGCTATGGATTGTGATAGGTTAGGCCCAAGGAGTAGAATCATTATAGTTTCTAGAGATGAGCACATCTTGAAAGTGTATGGAGTGGATGCGGTTTATGAAGTTCCACTGTTGAACCATGATGACTCTGTTAAATTATTTTGTCGAAATGCTTTCAAATGTGATAATATCATGAGTAATTATAAAAGCTTGGTAGATGACATACTAGATTATGCTGGTGGCCTCCCACTAGCAATTGAAGTATTGGGCTCATCTTTGTTTGGTCGGGATATCTTTGAATGGAGAAGTGCATTGGCTAGATTGTGGGAAACTCCAAATAAGAATATCATGGATGTGCTGCGATTAACTTTTGATGGGCTAGAGAAAATGGAAAAAGAAATATTTCTTCATATTGCTTGTTTTTTCAACTGGCGTAGTGAGAGATATGTTAAAGGAATTCTAAATTGTTGTGGACTTCATCCTGAAATTGGGTTAAGAGTTCTCATTGATAAATCGCTTATAAGCATTACAGACAATAGTACTACAATTCAAATGCATGGTTTGTTGGAAGAGCTAGGCCAAAAGATTGTTCAAGAAGATTCAACCAAAGAGTTAAAAAAGTGGAGCAGGTTGTGGCTTCACAAACATTTCTATGATGTTATGTTGGAGAATATGGAAAAGAATGTTGAAGCCATACCCAATCAACTTGTTAAACTTTCCTTGAAGCGGAGCAACATCAAACAGCTATGGGAAGGCAAGAAGTATCTGCCCAATTTGAGAAGTCTGGATCTAAGGTATTCCAAAAAGTTAATCAAGACACCTGATTTTGGAGAGGTCCCAAATCTTGAGCGGCTAAATCTACAAGGATGTGCGTTCAAGAATCCAGTTAGGCAATTGAAGAAGGTTGATACAAGTGAAAGTGCAACACATTCCCAATCAACGTCTTCCAATATCTTCAAATGGTTTAGAATGCCTTTCCATTCCTTATACCCCAGGGCACATACAGATTTGTTGCCTTCCTTGGCCAGCTTATCTTGTTTGCGTGCACTTGATATTAGTTTTTGCGGCCTAAGCCAAATCCCTGATGATATTGGATGCCTACATTGGTTGGAAAGATTAAATTTAGGGGGAAACAATTTTGTGACACTGCCTAGTCTTAAGGACCTTTCCAAACTTGTATATTTAAACTTGCAGCATTGCAAACAGTTGAAATCTTTGCCTGATCTTCCTCCATCACCTCCTGTTATCAAGGAGAATTCTGGTAATGGGTCAATAGGATTGTATATTTTCAACTGTCCTGAATTGGGTGATATGGAACGCTGCAGTAGCATTGCTTTTTCATGGATGATAAAATTCATTCATGCAAGCCAACATTCCTCCTTCTCTGGTCAGATTGGAATTATCATTCCTGGAAGTGAAACTCCAAGGCGGTTCAACAATCAGAAAATGGGTAGGTCAATAAGCATAGACCCATTTCCCATTATGGATGACAATAACTGCATTGGAATTGCTTGCTGTGCAGTATTTTATGTGGCACCCGGTGATTCAACTACCACAACAGATGAATGGGAAGGTGAAATAAGGCTAGAATTTGGCGGTGGTCGCTATATGACTTCGGCTTTATGCACGAGTTCAGTATATGCCTATAGAAATCTTATTACTGTCAAATCAAATCACATGTTTCTATTGTATTTCGCTCGAGAAACATTCCTTTACTTCCTGAGCACTATACACCGAACACCCATGGGTCTTTATGATGTCAAAATGCAGACTTTTGTTGAGTACCCATGTTTGGATATGGAGGTGTTGAACAGCGGATATTGTTGGGTATATAAAGAGGATCTGCAACGGATGCACTGGGGAAATTCACTAGCTCAGAAGCGCAAGTTTTTGGCAATTGAAGATGAGGCAGAGGAACAACCACAGACAGAATCATTCATCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02698	10491	14462	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002698s00041215.1	PF01582.15	TIR	20	134	1.80E-16
Glyur002698s00041215.1	PF00931.17	NB-ARC	180	433	1.80E-37
Glyur002698s00041215.1	PF07725.7	LRR_3	526	544	0.00022
Glyur002698s00041215.1	PF00560.28	LRR_1	637	657	0.6
Glyur002698s00041215.1	PF00560.28	LRR_1	660	679	0.22
Glyur002698s00041215.1	PF00560.28	LRR_1	681	698	1

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.264
SRR1783600	control	0.285
SRR1783602	moderate drought stress	0.345
SRR1811619	moderate drought stress	0.381

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.277
DRR006520	Root Summer glycyrrhizin high producing strain	6.060
DRR006521	Root Winter glycyrrhizin high producing strain	4.600
DRR006522	Root Winter glycyrrhizin high producing strain	4.149
DRR006523	Root Summer glycyrrhizin low producing strain	8.568
DRR006524	Root Summer glycyrrhizin low producing strain	8.128
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.656
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.539

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.159
SRR2868004	Drought Stress (root)	2.553
SRR2967015	Control (root)	2.861

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.225
SRR9715740	Leaf	0.082
SRR9715741	Leaf	0.108
SRR9715739	Root	0.000
SRR9715742	Root	0.041
SRR9715743	Root	0.071

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.021
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.023
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.603
SRR8400027	Control - Root	0.370