Gene detail

Gene detail information of Glyur002696s00041830

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25620.2	0	ABC-2 type transporter family protein
NR	XP_003520157.2	0	PREDICTED: ABC transporter G family member 21-like [Glycine max]
COG	YP_001302825.1	8.00E-37	multidrug ABC transporter ATPase [Parabacteroides distasonis ATCC 8503]
Swissprot	tr\|Q7XA72\|AB21G_ARATH	0	ABC transporter G family member 21
trEMBL	tr\|K7K818\|K7K818_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G14470.3}

Sequence

Transcript Sequence

>Glyur002696s00041830.1
ATGATGCCACCTCAGCAAGAAACCACTATTACACCAAACATTCCGGCAACCCCAAACCGGCCGGAAAACAACTCCGTCCATGCGGAACCAGCAGCAGCAGCCTCCTCCACTAACGACGTCATAAAACCCACTTTGGATAACGACATTATTCCTTCTCATCATCAGCAGCAGCAACAAGCACCTTCANCGAGACTCTCCATTCTTCACCAATCCCTCCGTCCTGTTACCCTCAAATTTGAAGATGTTTGTTACAGCATAACCATGGGAAGGCCGGAGCATGGTTGTTGTGNCAGTGTAAGTCCTTCGAAAGAGCCTAAGCCAACACGTGCGGTGCTGAACGGCGTGACTGGGCTTGTGGGCNCAGGTGAGGTGATGGCAATGTTGGGCCCATCAGGGAGCGGCAAGACCACTCTCCTCACCGCCCTCGCCGGCAGACTTGCAGGAAAACTCTCCGGCACCATCACNTACAACGGCAACCCTTTCTCCGGCTCCACGAGGCGAAGCACCGGATTCGTGTCACAGGACGACGTGCTCTACCCTCACCTCACCGTGCACGAGACCCTCTCCTACGCCGCTCTCCTGAGACTCCCCCGGAGCCTCACACGGGAACAGAAGATGGAACACGTGGACACCGTCATTGCGGAGCTCGGGCTCTCGAGGTGCCGGAACAGCCCCNTCGGAGGCGGTTCCGCCTTGTTCCGGGGGATCTCCGGCGGGGAGCGGAAGCGGGTCAGTATCGGGCAGGAGATGCTGGTCAACCCGAGTTTGTTGCTGCTAGACGAGCCAACGTCTGGGTTGGATGCCACCACGGCCCAACGCATCGTGGCGGTGTTGAGGAGCCTCGCCCGTGGTGGCCGGACCGTGGTGACTACTATTCACCAGCCTTCCAGCCGGCTGTATAGGATGTTTGATAAGGTTGTTGTGCTGTTGGATGGGTGCCCAATTTACAGTGGGCAGGCGGGTCGGGTCATGGAGTATCTTGAGGCCGTTGGATTTGTACCCGCTTTCAATTTTGTCAACCCGGCTGATTTTCTGCTTGACCTTGCTAACGGCATAGTCGCTGATGTTAAACCGAATGATATGATAGATCAACATCAAGATCGTCAAACTTCAATCAAACAGTCCCTAATCTCAGCATATAAAAAGAACTTATACCCTCTTCTAAAAGAAGAGATTCAAAGGAATAATAGAGACCCAACATTTTTTGCTACAGGAACACGCAGAAGCTCTGAGAACCAATGGACCACTAGCTGGTGGGAGCAATTCAAGGTTCTACTCAAAAGGGGTTTAAAGGAGAGAAGGCATGAATCTTATTCTGGCTTAAGGATTTTCCAAGTCTTGTCTGTCTCTATTCTTTCAGGACTTTTGTGGTGGCATTCTGATCCCTCACATATACAAGATCAGGTAGGTCTGCTTTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTCTTCAATGCCATCTTTGCATTTCCCCTGGACCGACCAATGCTGATGAAAGAACGTTCATCAGGAATGTACCATCTCTCCTCCTACTATGTTGCCCGGATGGTTGGTGACTTACCAATGGAGCTTGTGCTTCCTACCATCTTTGTAACTATCACCTACTGGATGGGTGGTCTCAAACCTTCGCTTGTCACATTTGTGGTAACCCTCTTGATCATGCTTTTTAATGTGTTGGTCTCTCAAGGAATAGGCCTAGCACTTGGGGCCATTCTAATGGATGTGAAACAGGCCACAACTCTAGCCTCAGTTACCATGCTAGTGTTTCTTTTAGCTGGTGGTTACTACATTCAGAAAATCCCATCTTTTATTGCTTGGTTGAAGTACATTTCTTTCAGTCACTACTCCTACAAGCTTCTGGTAGGAGTGCAGTACTCAGTTAAGGATGTTTATGAGTGTGGACCAGGGCTATATTGTAGGATAAGAGATTTTCCTGCCATAAAATGTCTTGAGCTTGATAATATGTGGGGTGATGTGGTTGTGTTGACTGTAATGTTGATTGGATACAGAATTGTGGCTTATCTAGCTTTANTGAGGATGGGGCTGCATCACTGATCTAGAGGCTTCATGAGTTGATTAGAGGGATCATAATGTAAGTTTACACACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02696	22365	28123	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002696s00041830.1	PF00005.22	ABC_tran	113	264	3.00E-25
Glyur002696s00041830.1	PF01061.19	ABC2_membrane	420	626	4.60E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.749
SRR1783600	control	0.783
SRR1783602	moderate drought stress	1.563
SRR1811619	moderate drought stress	1.611

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.805
DRR006520	Root Summer glycyrrhizin high producing strain	1.840
DRR006521	Root Winter glycyrrhizin high producing strain	0.554
DRR006522	Root Winter glycyrrhizin high producing strain	0.565
DRR006523	Root Summer glycyrrhizin low producing strain	0.639
DRR006524	Root Summer glycyrrhizin low producing strain	0.628
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.201
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.132

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.620
SRR2868004	Drought Stress (root)	0.515
SRR2967015	Control (root)	0.376

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.758
SRR9715740	Leaf	0.831
SRR9715741	Leaf	2.760
SRR9715739	Root	0.295
SRR9715742	Root	12.083
SRR9715743	Root	8.660

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.096
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.144
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.081

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.972
SRR8400027	Control - Root	1.152