Gene detail

Gene detail information of Glyur002692s00041334

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16010.1	1.00E-53	3-oxo-5-alpha-steroid 4-dehydrogenase family protein
NR	XP_004516219.1	1.64E-92	PREDICTED: very-long-chain enoyl-CoA reductase-like [Cicer arietinum]
Swissprot	tr\|Q2QDF6\|DET2_GOSHI	9.00E-23	Steroid 5-alpha-reductase DET2
trEMBL	tr\|G7KJ00\|G7KJ00_MEDTR	1.00E-90	3-oxo-5-alpha-steroid 4-dehydrogenase family protein {ECO:0000313\|EMBL:AES75395.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02692	1124	1594	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006629 lipid metabolic process

cellular_component

GO:0005737 cytoplasm

GO:0016021 integral component of membrane

molecular_function
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002692s00041334.1	PF02544.11	Steroid_dh	45	156	2.00E-27

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.171
SRR1783600	control	0.232
SRR1783602	moderate drought stress	0.160
SRR1811619	moderate drought stress	0.161

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.230
DRR006520	Root Summer glycyrrhizin high producing strain	0.228
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.815
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.872

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.591
SRR2868004	Drought Stress (root)	1.297
SRR2967015	Control (root)	1.297

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.927
SRR9715740	Leaf	42.320
SRR9715741	Leaf	10.978
SRR9715739	Root	0.000
SRR9715742	Root	0.222
SRR9715743	Root	0.000

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.013
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.715
SRR8400027	Control - Root	1.122