Gene detail information of Glyur002686s00038624 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52840.1 | 6.00E-20 | NADH-ubiquinone oxidoreductase-related |
| NR | AAL32032.1 | 6.53E-29 | NADH-ubiquinone oxidoreductase [Retama raetam] |
| Swissprot | tr|Q9FLX7|NDUA5_ARATH | 2.00E-24 | Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial (Precursor) |
| trEMBL | tr|Q8W544|Q8W544_9FABA | 2.00E-29 | NADH-ubiquinone oxidoreductase {ECO:0000313|EMBL:AAL32032.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02686 | 32624 | 33633 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.066 |
| SRR1783600 | control | 5.057 |
| SRR1783602 | moderate drought stress | 5.498 |
| SRR1811619 | moderate drought stress | 6.420 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.168 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.036 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.178 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.419 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.928 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.030 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.153 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.083 |
| SRR2868004 | Drought Stress (root) | 0.830 |
| SRR2967015 | Control (root) | 0.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.204 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.014 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.169 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.124 |
| SRR8749028 | MeJA induced 9h | 1.046 |
| SRR8749029 | MeJA induced 9h | 5.470 |
| SRR8749030 | Uninduced | 2.494 |
| SRR8749031 | Uninduced | 8.861 |
| SRR8749032 | Uninduced | 7.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.187 |
| SRR8400027 | Control - Root | 0.108 |