Gene detail

Gene detail information of Glyur002686s00038623

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G42170.1	3.00E-21	BED zinc finger ;hAT family dimerisation domain
NR	XP_010675028.1	6.50E-45	PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Beta vulgaris subsp. vulgaris]
Swissprot	tr\|P08770\|TRA1_MAIZE	5.00E-24	Putative AC transposase
trEMBL	tr\|V9Q4P4\|V9Q4P4_MEDTR	5.00E-45	Putative transposase {ECO:0000313\|EMBL:AHC08670.1}

Sequence

Transcript Sequence

>Glyur002686s00038623.1
ATGGCTCCAGCTCGAGCAGTAGTAGACGTCGTCAGACCCAAAAGCGAAAACCCAGAGAAGGAACCAGAGAAACCCACAGCTAGAAGAAACCAGAGCAGACACAGCAGAATAGATCCCAGCTGTGGTAGAAATCGCACCCCTAGTGTGAAGGCGTCAGACCCAAAAGCGAAAGTGCCACGTACGATCGTCAGAATAGATCACAGCTGTGGACAAAATCCCACCACCACCCGACAACCCGGCTCGGACCGAATGCTTCGAGCCCAGTCTGAGTTTATATCCTGGAGTCACAATCATTCTGAACTCTTAGGTTCTATGGCATGTTCTATGAGGGAAAAATTTAATAAATATTGGGGAAGTGTTGAAAAGTTCAATCCATTGTTGTTTGTTGCTGTCTTGGATCCTCGTTACAAACTTGATTATGTCAATTGGAGTTTAGAGGAGATCTATGATAAGGAATTAGCTGCTAGAATGACTAATCTGAAAGTGAAGATGGTGGAGATTCTTCAAAAAAGTGATGTCTTGAATGAAAAACTCAAGGGATTGAGCAGTGTTAAGGGGGTTTTTGTTAATAGGGTGGAGGTTTGGAAAAAGCATAAGAGGGCCAAAACTAATTCAGATCAATCAGATCTTGAGAGATATTTGGCAGAGGATACTATAGATGATACTGAGAATGCTGACTTTGATATCTTGAGTTGGTGGAAATCAAATTCTTTAAAATATAGGATCCTTTCTCTCATTGCTCGTAATGTATTGGCTGTTCCGGTTTCTACTGTGGCATCTGAGTCATGCTTTAGCACAAGTGGACGTGTGCTTGATGTTTTCCGCAGCTCTTTGTCTCCTAAAATGGCTGAAGCACTTATTTGCAGTCAAAATTGGTTATACCCAGCTGGTCTGAATTTTGATAAGAAGGATTTTGATCAATTTGACAGCACTGAGAAAATTGTTGATGATGTTTCAACCATATTCTTGCGTCACAAGGGAGGAAATGACAAGCAGCAAGTGATGAGCATTGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02686	15724	18536	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002686s00038623.1	PF14372.1	DUF4413	85	167	1.10E-14
Glyur002686s00038623.1	PF05699.9	Dimer_Tnp_hAT	209	293	1.50E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.914
SRR1783600	control	0.969
SRR1783602	moderate drought stress	1.880
SRR1811619	moderate drought stress	1.841

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.790
DRR006520	Root Summer glycyrrhizin high producing strain	3.145
DRR006521	Root Winter glycyrrhizin high producing strain	2.675
DRR006522	Root Winter glycyrrhizin high producing strain	2.128
DRR006523	Root Summer glycyrrhizin low producing strain	4.680
DRR006524	Root Summer glycyrrhizin low producing strain	5.300
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.021
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.827

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.091
SRR2868004	Drought Stress (root)	5.067
SRR2967015	Control (root)	5.633

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.091
SRR9715740	Leaf	0.771
SRR9715741	Leaf	4.010
SRR9715739	Root	0.000
SRR9715742	Root	1.135
SRR9715743	Root	0.832

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.011
SRR8749028	MeJA induced 9h	12.570
SRR8749029	MeJA induced 9h	7.304
SRR8749030	Uninduced	6.286
SRR8749031	Uninduced	9.776
SRR8749032	Uninduced	4.432

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.446
SRR8400027	Control - Root	2.621