Gene detail information of Glyur002683s00037403 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14910.1 | 4.00E-40 | |
| NR | KEH19570.1 | 8.40E-60 | Rab3 GTPase-activating protein non-catalytic subunit [Medicago truncatula] |
| trEMBL | tr|A0A072U188|A0A072U188_MEDTR | 3.00E-60 | Rab3 GTPase-activating protein non-catalytic subunit {ECO:0000313|EMBL:KEH19570.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02683 | 29443 | 30823 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002683s00037403.1 | PF14655.1 | RAB3GAP2_N | 2 | 61 | 3.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.647 |
| SRR1783600 | control | 7.408 |
| SRR1783602 | moderate drought stress | 9.819 |
| SRR1811619 | moderate drought stress | 9.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.410 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.973 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.159 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.891 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.931 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.115 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.583 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.566 |
| SRR2868004 | Drought Stress (root) | 18.950 |
| SRR2967015 | Control (root) | 17.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.824 |
| SRR9715740 | Leaf | 10.006 |
| SRR9715741 | Leaf | 9.689 |
| SRR9715739 | Root | 6.690 |
| SRR9715742 | Root | 8.655 |
| SRR9715743 | Root | 8.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.860 |
| SRR8749028 | MeJA induced 9h | 13.141 |
| SRR8749029 | MeJA induced 9h | 31.352 |
| SRR8749030 | Uninduced | 22.387 |
| SRR8749031 | Uninduced | 28.179 |
| SRR8749032 | Uninduced | 32.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.920 |
| SRR8400027 | Control - Root | 14.399 |