Gene detail information of Glyur002683s00037400 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53330.1 | 5.00E-105 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004514637.1 | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9MAG8|PPR79_ARATH | 1.00E-132 | Putative pentatricopeptide repeat-containing protein At1g53330 |
| trEMBL | tr|I1KDK2|I1KDK2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G32741.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02683 | 15337 | 17388 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002683s00037400.1 | PF13041.1 | PPR_2 | 150 | 201 | 6.00E-14 |
| Glyur002683s00037400.1 | PF01535.15 | PPR | 227 | 255 | 0.014 |
| Glyur002683s00037400.1 | PF13041.1 | PPR_2 | 262 | 310 | 1.80E-12 |
| Glyur002683s00037400.1 | PF13041.1 | PPR_2 | 331 | 380 | 1.50E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.109 |
| SRR1783600 | control | 2.179 |
| SRR1783602 | moderate drought stress | 2.194 |
| SRR1811619 | moderate drought stress | 1.989 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.120 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.355 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.092 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.096 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.607 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.820 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.502 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.174 |
| SRR2868004 | Drought Stress (root) | 4.132 |
| SRR2967015 | Control (root) | 4.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.310 |
| SRR9715740 | Leaf | 0.617 |
| SRR9715741 | Leaf | 0.362 |
| SRR9715739 | Root | 0.505 |
| SRR9715742 | Root | 1.533 |
| SRR9715743 | Root | 1.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.574 |
| SRR8749028 | MeJA induced 9h | 4.275 |
| SRR8749029 | MeJA induced 9h | 4.977 |
| SRR8749030 | Uninduced | 2.025 |
| SRR8749031 | Uninduced | 3.139 |
| SRR8749032 | Uninduced | 2.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.650 |
| SRR8400027 | Control - Root | 2.675 |