Gene detail information of Glyur002680s00042305.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62980.1 | 0 | F-box/RNI-like superfamily protein |
| NR | XP_004495993.1 | 0 | PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like [Cicer arietinum] |
| Swissprot | tr|Q570C0|TIR1_ARATH | 0 | Protein TRANSPORT INHIBITOR RESPONSE 1 |
| trEMBL | tr|A0A072VML5|A0A072VML5_MEDTR | 0 | Transport inhibitor response-like protein {ECO:0000313|EMBL:KEH43259.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02680 | 18397 | 20978 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur002680s00042305.1 | PF12937.2 | F-box-like | 28 | 58 | 1.40E-06 |
| Glyur002680s00042305.1 | PF13516.1 | LRR_6 | 306 | 321 | 1.4 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.462 |
| SRR1783600 | control | 20.366 |
| SRR1783602 | moderate drought stress | 34.061 |
| SRR1811619 | moderate drought stress | 35.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.248 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.575 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.685 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.504 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.553 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.157 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.074 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.192 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.794 |
| SRR2868004 | Drought Stress (root) | 34.292 |
| SRR2967015 | Control (root) | 42.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 28.988 |
| SRR9715740 | Leaf | 48.664 |
| SRR9715741 | Leaf | 33.809 |
| SRR9715739 | Root | 61.294 |
| SRR9715742 | Root | 26.696 |
| SRR9715743 | Root | 31.378 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.042 |
| SRR8749028 | MeJA induced 9h | 43.377 |
| SRR8749029 | MeJA induced 9h | 15.243 |
| SRR8749030 | Uninduced | 10.984 |
| SRR8749031 | Uninduced | 6.059 |
| SRR8749032 | Uninduced | 14.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.871 |
| SRR8400027 | Control - Root | 28.358 |