Gene detail

Gene detail information of Glyur002675s00040263.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G62620.1	Galactosyltransferase family protein
NR	XP_003522355.1	PREDICTED: probable beta-1,3-galactosyltransferase 19-like [Glycine max]
Swissprot	tr\|Q9LV16\|B3GTJ_ARATH	Probable beta-1,3-galactosyltransferase 19
trEMBL	tr\|I1JX05\|I1JX05_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G34620.1}

Sequence

Transcript Sequence

>Glyur002675s00040263.1
TTCTTATTATATCACTCCCCACCAAGTCGGTCTCATTTTCCTCTCTCTCCCTCTTGTTTTGTGCGGTGCGGTAACGTGGAGTTGGAGAACTGTGTGCGTGTGAGGGAGAGAGAGAAGAGAGAAAATTGCATAAGGAGAATAAGGAATCTTNTTCCTGTGACGGTTTTATTTTCATTTTTTTTTCCTCCGTTGCTGCTAAAGAGAGAAGATGAAGAGAAAGCTAGAAGCTTTGGTTCGGTTAAGCAGAAGAAGATCGATTCAGTCTCTAATGGGAATCGCTCTCTTGTACCTCGTACTAGTCACACTCGAAATCCCCTTCGTCTTAAAAACCGGGTTCACCACCACCGTCACAACAACACCAACACCACCGAGGCTGTTACTCAGCAAGGAGGACCAGCAACAACGACTCGCTCCAACTCGCCCCAATAAAACCGTTTCCAACTCGGCGAACCCACCGAGTCAACTCGCCTACAGCAGAATCGTCTCCGGTTTAGTCTTCGACGACGAAGACAACAACGAGGAAAAGTCGTTGTTGGAGCTCTACAAGCTCGCGAAGAACGCACGCGAGGTTGGACTTAGTCTCTGGGAGGATCTCCGGTCTGGGAAAGCCGTTGCTGCGGCTAAGCCGGAGAACAGGTCCGGTCCGTGTCCCGGTTCGGTGTCGCTGTCCGGTTCGGAATTCTCGGGAGTTGCGGCGCTCCCTTGCGGACTCACGCTGGGGTCGCACGTAACGGTCGTGGGGAAGCCGTTGGGGAAGAAGATGAAGGAGGAAGGGGATGAAACGGTGTCGTTTGTGGTGGAGCTGCAGGGGCTGAAGACGGTGGAAGGTGAGGAGCCTCCGAGGGTGTTTCACTTCAACCCGAGGTTGAAGGGTGATTGGAGCGGTAAACCCGTCATCGAGCTCAACACGTGTTACCGGATGCAGTGGGGTGCTGCTCTCAGGTGTGGTGGTTGGAAATCCAGGGCTGATGAAGATACTGTCGATAGGCTGGTGAAATGTGAGAAGTGGATTCGGGATGATGAAGATAGCGCGGAGGAGTCTAAGGCGACGTGTGCTGGGTTGGAAGGGTATCATGTTACTGTCGATGGGAGGCATGTCGCCTCTTTCCCTTACCGCACTGTGAGTACTAGTAATAATCTCCTTGAATTTGTCAACTTGAAGTTTGGTTTGGCTCGCTTAAGAGGATTTACTCTTGAGGATGCCACTGGTCTTTCCTTGAGTGGAGACATCGATGTCCACTCTATATTTGCAGCCTCTTTGCCTTCATCGCATCCAAGTTTCGCCCCACAGCGCCATCTTGAATACTCAGCTAGGTGGCGTGCCCCTCCGCTTCCTGATTCCGGTGTAGAATTGTTCATCGGTGTCCTCTCGGCTGGAAACCATTTTGCCGAAAGGATGGCTGTAAGGAAGTCGTGGATGCAGCATAGGCTCATCAAGTCTGCAACTGTGGTTGCTCGTTTCTTTGTAGCACTGCACCCAAGACAAGAAATTAATGTAGAGTTAAGGAAGGAAGCGGAATTTTTTGGTGATATTGTTATAGTGCCTTACATGGATAACTACGACCTTGTTGTGTTGAAAACAGTGGCCATATGTGAATATGGGGTTCATACAGTTGCTGCTAAGTATATCATGAAAGGTGACGATGACACTTTTGTAAAAGTAGATGCTGTTATCAATGAAGCAAGGAAGGTTCCGGATGATATGAGCTTTTATATTGGGAACATTAATTATTACCACAAACCTCTGCGCCATGGTAAATGGGCGGTGACATACGAGGTCATGAGTTCGAATCTAGAAATAGCCTCTCCGCTTGTAGGGGAGTGGCCAGAAGAAGATTACCCACCCTATGCTAATGGACCGGGTTATATTTTGTCATTGGATATTGCACGCTACATTGTATCTGAATTTGAGATGCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTAGAGCAATTCAACAGCTCAAAACCAGTACTCTACTTGCATAGCTATAATTTCTGCCAGTTTGGTTGCATTGAAGGCTATTACACTGCCCATTACCAATCACCTAGGCAAATGATGTGCCTGTGGGATAAATTGCAAAGGAAGACAAGGCCTCAGTGTTGCAATATGAGATGAGGAATGAGGTTTTTGGCTTTGTGCCCATCTTTGAATCCAGAAAACAAGTTTTGCAGTGAAGTCAATAGCATCGAATATTGTTGTATATATAACTGTGAAGCTTGGTGTTAGTTAAACTTCACCCTTGTATAAATTGNCCTTTTTGAATCTCTGCATTCACTATTTGTTTATTGAGAACATTTTAAGTGACCCCCGTTTTGGGGTTCTCAATTCTTTTGGCTCGCGGGGTTGGAAGAAGATGATGGGANGTGGAAGGGAATATTTGTTGCTGATACAAATTTTGTAAAATAATTTGAAGGATCGCATTCGGTATCTATNGAGAATATATAGATCAATTATTATATCAACCCACCAAGACATGTTGGCGGTTTCCATGCTCCCACCTTTATCCCTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02675	29316	33720	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006486 protein glycosylation

cellular_component
GO:0016020 membrane

molecular_function

GO:0008378 galactosyltransferase activity

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002675s00040263.1	PF00337.17	Gal-bind_lectin	161	306	1.40E-28
Glyur002675s00040263.1	PF01762.16	Galactosyl_T	395	589	4.50E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.584
SRR1783600	control	13.431
SRR1783602	moderate drought stress	21.848
SRR1811619	moderate drought stress	21.573

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	56.438
DRR006520	Root Summer glycyrrhizin high producing strain	56.311
DRR006521	Root Winter glycyrrhizin high producing strain	32.683
DRR006522	Root Winter glycyrrhizin high producing strain	31.384
DRR006523	Root Summer glycyrrhizin low producing strain	118.549
DRR006524	Root Summer glycyrrhizin low producing strain	117.179
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.732
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.668

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.393
SRR2868004	Drought Stress (root)	45.964
SRR2967015	Control (root)	44.844

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.280
SRR9715740	Leaf	42.738
SRR9715741	Leaf	68.487
SRR9715739	Root	88.428
SRR9715742	Root	136.574
SRR9715743	Root	130.025

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.440
SRR8749028	MeJA induced 9h	76.070
SRR8749029	MeJA induced 9h	72.348
SRR8749030	Uninduced	74.125
SRR8749031	Uninduced	56.580
SRR8749032	Uninduced	50.986

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.875
SRR8400027	Control - Root	49.447