Gene detail information of Glyur002671s00039022 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08470.1 | 8.00E-21 | strictosidine synthase-like 3 |
| NR | XP_004506244.1 | 1.66E-34 | PREDICTED: adipocyte plasma membrane-associated protein-like [Cicer arietinum] |
| Swissprot | tr|Q8VWF6|SSL3_ARATH | 2.00E-24 | Protein STRICTOSIDINE SYNTHASE-LIKE 3 {ECO:0000303|PubMed:10777701} (Precursor) |
| trEMBL | tr|A0A072UIZ0|A0A072UIZ0_MEDTR | 1.00E-34 | Strictosidine synthase family protein {ECO:0000313|EMBL:KEH29729.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold02671 | 29501 | 29794 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.358 |
| SRR1783600 | control | 1.525 |
| SRR1783602 | moderate drought stress | 1.943 |
| SRR1811619 | moderate drought stress | 2.279 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.493 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.290 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.292 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.785 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.907 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.303 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.425 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.680 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.249 |
| SRR2868004 | Drought Stress (root) | 0.370 |
| SRR2967015 | Control (root) | 0.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.332 |
| SRR9715743 | Root | 1.304 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.373 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.801 |
| SRR8400027 | Control - Root | 1.652 |