Gene detail

Gene detail information of Glyur002671s00039021.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17770.1	4.00E-109	NADH:cytochrome B5 reductase 1
NR	XP_004511163.1	0	PREDICTED: NADH--cytochrome b5 reductase 1-like [Cicer arietinum]
COG	YP_004053693.1	4.00E-24	oxidoreductase fad/nad(p)-binding domain protein [Marivirga tractuosa DSM 4126]
Swissprot	tr\|Q9ZNT1\|NB5R1_ARATH	2.00E-137	NADH--cytochrome b5 reductase 1
trEMBL	tr\|B7FJK4\|B7FJK4_MEDTR	0	NADH-cytochrome b5 reductase {ECO:0000256\|RuleBase:RU361226}

Sequence

Transcript Sequence

>Glyur002671s00039021.1
ACTTGTTGATTTGCCAAATTTCATCATGCAATTGCAAAATATTGTTGGAGTTACCATTCAAAATGACACTTGGCTTACCCACATTGGATTTCAAGTCCTTATCCTTTGCTAAGAACTTNAAGCCTGAGCTGCTAGGTGGTGCAGTTGCTCTTGTTGCCGTTGGCCTTACGGCTGCTTATCTTTACTACCGCATGAAGAAGAAGTACCCCAAAGGTTGCTTGGACCCCAAAAATTTCAAAGAATTTAAACTTGTAAAGAAGACCCAGCTCAGCCACAATGTTGCAAGATTCAGATTTGCCCTTCCTACTCCTTCTTCGGTATTGGGCCTTCCTGTTGGNAAAAACATACTTGCCAGGGGAAGAGATAGTCAAGGAGAGGAAGTTATGAGATCATATACTCCAATCACATTGGATTCAGATATTGGCTACTTTGAATTAGTTGTGAAGATGTACCCAAATGGAAAGATGTCCCACCATTTTAGACAAATGAAGGAAGGGGACAGCTTGGCCGTGAAGGGCCCCAAGGGGCGTTTCAGTTACAAACCTGGCCAAGTTAGGGCATTTGGAATGCTTGCTGGTGGTTCAGGTATTACCCCAATGTTTCAGCTCATAAGAGCCATACTAGAAAACCCAAAGGACAAAACAAAGGTGTACCTCATTTACGCCAATGTGACNGTGGATGATGTTCTGTTAAAGGAAGAACTAGACAGCTTTGCCAACAGTTTTCCTCATAGATTCCAAGTCTATCATGTTCTTAATAAGCCTCCTAATGAATGGAATGGTGGCGTTGGGTTCATCACGAAGGAGATGATTGAAACCCATTGTCCAGCACCAGCCCCGGATATCCAGATACTTAGGTGTGGTCCACCACCCATGAATAAAGCCATGGCTACTCACCTTAACGCACTTGGATACACTTCAAACATGCAGTTCGAGTTCTAATTAACACCTCAATTATTCAACTCCTCAAATTCTTGCAACACTTTTTATTTGCTTGTATCAAACGTGTGTTAAGCTTCTGTAAAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02671	24698	28178	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00326	E1.6.2.2	EC:1.6.2.2	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002671s00039021.1	PF00970.19	FAD_binding_6	61	159	2.30E-30
Glyur002671s00039021.1	PF00175.16	NAD_binding_1	169	275	3.10E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.190
SRR1783600	control	4.321
SRR1783602	moderate drought stress	3.470
SRR1811619	moderate drought stress	3.475

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.954
DRR006520	Root Summer glycyrrhizin high producing strain	8.995
DRR006521	Root Winter glycyrrhizin high producing strain	0.216
DRR006522	Root Winter glycyrrhizin high producing strain	0.210
DRR006523	Root Summer glycyrrhizin low producing strain	13.456
DRR006524	Root Summer glycyrrhizin low producing strain	12.746
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.425
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.301

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.614
SRR2868004	Drought Stress (root)	14.890
SRR2967015	Control (root)	15.960

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.641
SRR9715740	Leaf	0.122
SRR9715741	Leaf	0.874
SRR9715739	Root	0.434
SRR9715742	Root	3.427
SRR9715743	Root	5.022

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.335
SRR8400027	Control - Root	6.243