Gene detail

Gene detail information of Glyur002668s00041923

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	ATCG01090.1	4.00E-81	NADPH dehydrogenases
NR	YP_009027321.1	4.42E-107	NADH-plastoquinone oxidoreductase subunit I (chloroplast) [Glycyrrhiza glabra]
COG	YP_007161776.1	2.00E-77	NAD(P)H-quinone oxidoreductase subunit I [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|Q09FQ6\|NDHI_NANDO	2.00E-107	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_01351}
trEMBL	tr\|A0A023I716\|A0A023I716_GLYGL	2.00E-107	NAD(P)H-quinone oxidoreductase subunit I, chloroplastic {ECO:0000256\|SAAS:SAAS00064212}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02668	32952	33795	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05580	ndhI	EC:1.6.5.3	Oxidative phosphorylation	map00190

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component
GO:0016020 membrane

molecular_function

GO:0008137 NADH dehydrogenase (ubiquinone) activity

GO:0016651 oxidoreductase activity, acting on NAD(P)H

GO:0051536 iron-sulfur cluster binding

GO:0051539 4 iron, 4 sulfur cluster binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002668s00041923.1	PF13237.1	Fer4_10	60	115	7.30E-08

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	12.855
SRR1783600	control	12.867
SRR1783602	moderate drought stress	13.426
SRR1811619	moderate drought stress	11.969

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.632
DRR006520	Root Summer glycyrrhizin high producing strain	10.774
DRR006521	Root Winter glycyrrhizin high producing strain	3.848
DRR006522	Root Winter glycyrrhizin high producing strain	4.049
DRR006523	Root Summer glycyrrhizin low producing strain	18.355
DRR006524	Root Summer glycyrrhizin low producing strain	19.763
DRR006525	Leaf Summer glycyrrhizin high producing strain	66.943
DRR006526	Leaf Summer glycyrrhizin high producing strain	70.325

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.377
SRR2868004	Drought Stress (root)	0.847
SRR2967015	Control (root)	0.906

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.486
SRR9715740	Leaf	5.190
SRR9715741	Leaf	16.354
SRR9715739	Root	13.575
SRR9715742	Root	1.536
SRR9715743	Root	4.699

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.899
SRR8749028	MeJA induced 9h	0.379
SRR8749029	MeJA induced 9h	0.819
SRR8749030	Uninduced	0.656
SRR8749031	Uninduced	0.644
SRR8749032	Uninduced	1.750

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.086
SRR8400027	Control - Root	0.150