Gene detail

Gene detail information of Glyur002668s00041921

Functional Annotation

Database	Orthologs	Annotation
TAIR	ATCG01050.1	NADH-Ubiquinone/plastoquinone (complex I) protein
NR	XP_003621689.1	Photosystem I iron-sulfur center [Medicago truncatula]
COG	YP_007113982.1	NADH dehydrogenase subunit M [Oscillatoria nigro-viridis PCC 7112]
Swissprot	tr\|Q2PMN2\|NU4C_SOYBN	NAD(P)H-quinone oxidoreductase chain 4, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_00491}
trEMBL	tr\|G7KTU3\|G7KTU3_MEDTR	NAD(P)H-quinone oxidoreductase chain 4 {ECO:0000313\|EMBL:AES77907.1}

Sequence

Transcript Sequence

>Glyur002668s00041921.1
ATGTCACATTCAGTAAAGATTTATGATACGTGTATAGGATGTACTCAATGTGTCCGAGCCTGTCCCACAGATGTATTAGAAATGATACCTTGGGACGGATGTAAAGCTAAGCAAATAGCTTCTGCCCCAAGAACAGAGGACTGTGTTGGTTGTAAGAGGTGTGAGTCCGCCTGTCCGACGGATTTCTTAAGTGTTCGAGTTTATTTATGGCATGAAACAACTCGAACGCGGGCTTTTCTGGCCCAAGTGTATCTTATTTTTATCACGAATTATTTTCCTTGGTTAACAATAGTTGTCGTTTTGCCAATAGCCGCAGGTTCCTTAATTTTCTTATTTCCTCATAGGGGAAATAAGGTAATTAGGTGGTATAGCATTTGTATATGCTTAATCGATCTCCTTCTAACAACCTATGTATTTTGTTATCATTTCCAATTGGATGATCCACTAATGCAACTGACGGAGAATTATAAATGGATCAATTTTTTTGATTTTTATTGGAGATTAGGAATAGATGGACTTTCTATAGGACCTATTTTACTGACGGGATTTATCACCACTTTAGCCACTTTAGCGGCTCAGCCGGTTACTCGAGAATACCAATTATTCCATTTCCTGATGTTAGCAATGTATAGCGGTCAAATAGGACCATTTTCTTCTCGAGATATTTTACTTTTTTTCATCATGTGGGAATTGGAATTAATTCCCGTTTATCTACTTTTATCCATGTGGGGGGGAAAGAAACGTTTGTATTCAGCTACAAAGTTTATTTTGTACACTGCGGGAAGTTCTGTTTTTTTATTAATGGGAGTTCTGGGTATCGGTTTATATGGTTCTAATGAACCAACATTAAATTTTGAAACATTAACTAATCAATCGTATCCTGTGGCGCTGGAAATAATATTCTATATGGGATTTCTTATTGCTTTTGCTGTCAAATCGCCGATTATACCCTTACATACATGGTTACCAGATACCCACGGAGAGGCACATTACAGCACTTGTATGCTTTTAGCCGGAATCTTATTAAAAATGGGAGCATATGGGTTGGTTCGAATTAATATGGAATTTCTTTCCCACGCTCATTCTATATTTAGCCCCTGGTTAATGATATTAGGTTCTATTCAAATAATCTATGCCGCTTCAACATCTCTTGGTCAACGTAATTTAAAAAAAAGAATAGCTTATTCCTCGGTATCTCATATGGGTTTCCTAATTCTAGGAATTGGTTCTATAAGCGATACTGGACTCAACGGAGCCATTTTACAAATCATATCTCATGGATTTATTGGCGCTGCGCTTTTTTTCTTGGCAGGAACTAGTTATGATAGACTACGTCTTCTTTATCTTGACGAAATGGGCGGAATGGCTATCCCAATGCCAAAAATATTCACGACTTTTACTATCTTATCGATGGCCTCTCTTGCATTGCCAGGCATGAGCGGTTTTATTGCAGAATTGATAGTTTTTTTTGGAATAATTACTAGTCAAAAATATCTTTTAATGATTAAAATACTAATTACTTTTGTAACAGCAATTGGAATGATATTAACTCCTATTTATTTATTATCTCTCTTACGGCAGATGTTCTATGGATATAAGTTTTTTAATACACCAAACTCTTATTTTTTTGATTCTGGGCCGAGAGAATTATTTATTTCGATTTCTATCCTTATACCCGTAATAGGTATTGGTCTTTATCCGGATTTCATTTTCTCATTCTCGGTTGACAAGGTTGAAGCTATTCTATCTAATTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold02668	29617	31486	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05575	ndhD	EC:1.6.5.3	Oxidative phosphorylation	map00190

Gene Ontology

biological_process

GO:0009773 photosynthetic electron transport in photosystem I

GO:0015979 photosynthesis

GO:0042773 ATP synthesis coupled electron transport

GO:0055114 oxidation-reduction process

cellular_component

GO:0009522 photosystem I

GO:0042651 thylakoid membrane

molecular_function

GO:0008137 NADH dehydrogenase (ubiquinone) activity

GO:0009055 electron carrier activity

GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor

GO:0051536 iron-sulfur cluster binding

GO:0051539 4 iron, 4 sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur002668s00041921.1	PF14697.1	Fer4_21	9	61	4.20E-09
Glyur002668s00041921.1	PF00361.15	Oxidored_q1	219	491	2.10E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.860
SRR1783600	control	9.226
SRR1783602	moderate drought stress	9.875
SRR1811619	moderate drought stress	9.728

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.309
DRR006520	Root Summer glycyrrhizin high producing strain	4.477
DRR006521	Root Winter glycyrrhizin high producing strain	2.303
DRR006522	Root Winter glycyrrhizin high producing strain	2.413
DRR006523	Root Summer glycyrrhizin low producing strain	6.806
DRR006524	Root Summer glycyrrhizin low producing strain	6.815
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.882
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.460

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.580
SRR2868004	Drought Stress (root)	0.395
SRR2967015	Control (root)	0.369

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.697
SRR9715740	Leaf	4.715
SRR9715741	Leaf	7.367
SRR9715739	Root	8.565
SRR9715742	Root	1.892
SRR9715743	Root	4.339

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.836
SRR8749028	MeJA induced 9h	0.707
SRR8749029	MeJA induced 9h	0.474
SRR8749030	Uninduced	0.445
SRR8749031	Uninduced	0.812
SRR8749032	Uninduced	0.606

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.199
SRR8400027	Control - Root	0.208